| Exploring the aggregation free energy landscape of the amyloid-β protein (1–40) W Zheng, MY Tsai, M Chen, PG Wolynes Proceedings of the National Academy of Sciences 113 (42), 11835-11840, 2016 | 129 | 2016 |
| Aggregation landscapes of Huntingtin exon 1 protein fragments and the critical repeat length for the onset of Huntington’s disease M Chen, PG Wolynes Proceedings of the National Academy of Sciences 114 (17), 4406-4411, 2017 | 83 | 2017 |
| Assemblies of calcium/calmodulin-dependent kinase II with actin and their dynamic regulation by calmodulin in dendritic spines Q Wang, M Chen, NP Schafer, C Bueno, SS Song, A Hudmon, ... Proceedings of the National Academy of Sciences 116 (38), 18937-18942, 2019 | 48 | 2019 |
| Surveying biomolecular frustration at atomic resolution M Chen, X Chen, NP Schafer, C Clementi, EA Komives, DU Ferreiro, ... Nature communications 11 (1), 5944, 2020 | 45 | 2020 |
| The aggregation free energy landscapes of polyglutamine repeats M Chen, MY Tsai, W Zheng, PG Wolynes Journal of the American Chemical Society 138 (46), 15197-15203, 2016 | 40 | 2016 |
| Exploring the interplay between fibrillization and amorphous aggregation channels on the energy landscapes of tau repeat isoforms X Chen, M Chen, NP Schafer, PG Wolynes Proceedings of the National Academy of Sciences 117 (8), 4125-4130, 2020 | 37 | 2020 |
| Protein folding and structure prediction from the ground up: The atomistic associative memory, water mediated, structure and energy model M Chen, X Lin, W Zheng, JN Onuchic, PG Wolynes The Journal of Physical Chemistry B 120 (33), 8557-8565, 2016 | 36 | 2016 |
| Energy landscapes of a mechanical prion and their implications for the molecular mechanism of long-term memory M Chen, W Zheng, PG Wolynes Proceedings of the National Academy of Sciences 113 (18), 5006-5011, 2016 | 34 | 2016 |
| OpenAWSEM with Open3SPN2: A fast, flexible, and accessible framework for large-scale coarse-grained biomolecular simulations W Lu, C Bueno, NP Schafer, J Moller, S Jin, X Chen, M Chen, X Gu, ... PLoS computational biology 17 (2), e1008308, 2021 | 31 | 2021 |
| AWSEM-Suite: a protein structure prediction server based on template-guided, coevolutionary-enhanced optimized folding landscapes S Jin, VG Contessoto, M Chen, NP Schafer, W Lu, X Chen, C Bueno, ... Nucleic acids research 48 (W1), W25-W30, 2020 | 23 | 2020 |
| Surveying the energy landscapes of Aβ fibril polymorphism M Chen, NP Schafer, PG Wolynes The Journal of Physical Chemistry B 122 (49), 11414-11430, 2018 | 23 | 2018 |
| Protein folding and structure prediction from the ground up II: AAWSEM for α/β proteins M Chen, X Lin, W Lu, JN Onuchic, PG Wolynes The journal of physical chemistry B 121 (15), 3473-3482, 2017 | 23 | 2017 |
| Template-guided protein structure prediction and refinement using optimized folding landscape force fields M Chen, X Lin, W Lu, NP Schafer, JN Onuchic, PG Wolynes Journal of chemical theory and computation 14 (11), 6102-6116, 2018 | 19 | 2018 |
| Protein structure prediction in CASP13 using AWSEM-suite S Jin, M Chen, X Chen, C Bueno, W Lu, NP Schafer, X Lin, JN Onuchic, ... Journal of chemical theory and computation 16 (6), 3977-3988, 2020 | 17 | 2020 |
| Forging tools for refining predicted protein structures X Lin, NP Schafer, W Lu, S Jin, X Chen, M Chen, JN Onuchic, ... Proceedings of the National Academy of Sciences 116 (19), 9400-9409, 2019 | 16 | 2019 |
| The associative memory, water mediated, structure and energy model (AWSEM)-Amylometer: Predicting amyloid propensity and fibril topology using an optimized folding landscape model M Chen, NP Schafer, W Zheng, PG Wolynes ACS chemical neuroscience 9 (5), 1027-1039, 2017 | 15 | 2017 |
| Multiple binding configurations of Fis protein pairs on DNA: Facilitated dissociation versus cooperative dissociation MY Tsai, W Zheng, M Chen, PG Wolynes Journal of the American Chemical Society 141 (45), 18113-18126, 2019 | 14 | 2019 |
| Molecular-replacement phasing using predicted protein structures from AWSEM-Suite S Jin, MD Miller, M Chen, NP Schafer, X Lin, X Chen, GN Phillips, ... IUCrJ 7 (6), 1168-1178, 2020 | 12 | 2020 |
| Exploring the F-actin/CPEB3 interaction and its possible role in the molecular mechanism of long-term memory X Gu, NP Schafer, Q Wang, SS Song, M Chen, MN Waxham, PG Wolynes Proceedings of the National Academy of Sciences 117 (36), 22128-22134, 2020 | 9 | 2020 |
| Computationally exploring the mechanism of bacteriophage T7 gp4 helicase translocating along ssDNA S Jin, C Bueno, W Lu, Q Wang, M Chen, X Chen, PG Wolynes, Y Gao Proceedings of the National Academy of Sciences 119 (32), e2202239119, 2022 | 8 | 2022 |
Peter G. WolynesBullard-Welch Foundation Professor of Science, Professor of Chemistry, Professor of PhysicsVerified email at rice.edu
