Florian Plaza Oņate
Florian Plaza Oņate
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MSPminer: abundance-based reconstitution of microbial pan-genomes from shotgun metagenomic data
F Plaza Oņate, E Le Chatelier, M Almeida, ACL Cervino, F Gauthier, ...
Bioinformatics 35 (9), 1544-1552, 2019
A natural polyphenol exerts antitumor activity and circumvents anti–PD-1 resistance through effects on the gut microbiota
M Messaoudene, R Pidgeon, C Richard, M Ponce, K Diop, M Benlaifaoui, ...
Cancer Discovery 12 (4), 1070-1087, 2022
Impact of laparoscopic Roux-en-Y gastric bypass and sleeve gastrectomy on gut microbiota: a metagenomic comparative analysis
W Farin, F Plaza Oņate, J Plassais, C Bonny, C Beglinger, ...
Surgery for Obesity and Related Diseases 16 (7), 852-862, 2020
Quality control of microbiota metagenomics by k-mer analysis
F Plaza Onate, JM Batto, C Juste, J Fadlallah, C Fougeroux, D Gouas, ...
BMC genomics 16 (1), 183, 2015
Benchmarking second and third-generation sequencing platforms for microbial metagenomics
V Meslier, B Quinquis, K Da Silva, F Plaza Oņate, N Pons, H Roume, ...
Scientific Data 9 (1), 694, 2022
Alteration of gut microbiome in patients with schizophrenia indicates links between bacterial tyrosine biosynthesis and cognitive dysfunction
F Thirion, H Speyer, TH Hansen, T Nielsen, Y Fan, E Le Chatelier, ...
Biological psychiatry global open science 3 (2), 283-291, 2023
Both disease activity and HLA–B27 status are associated with gut microbiome dysbiosis in spondyloarthritis patients
M Berland, V Meslier, S Berreira Ibraim, E Le Chatelier, N Pons, ...
Arthritis & Rheumatology 75 (1), 41-52, 2023
The effects of Aronia berry (poly) phenol supplementation on arterial function and the gut microbiome in middle aged men and women: Results from a randomized controlled trial
M Le Sayec, Y Xu, M Laiola, FA Gallego, D Katsikioti, C Durbidge, ...
Clinical Nutrition 41 (11), 2549-2561, 2022
StrainFLAIR: strain-level profiling of metagenomic samples using variation graphs
K Da Silva, N Pons, M Berland, FP Oņate, M Almeida, P Peterlongo
PeerJ 9, e11884, 2021
The reactobiome unravels a new paradigm in human gut microbiome metabolism
G Bidkhori, S Lee, LA Edwards, EL Chatelier, M Almeida, B Ezzamouri, ...
bioRxiv, 2021.02. 01.428114, 2021
Diet Supplementation with NUTRIOSE, a Resistant Dextrin, Increases the Abundance of Parabacteroides distasonis in the Human Gut
F Thirion, K Da Silva, F Plaza Oņate, AS Alvarez, C Thabuis, N Pons, ...
Molecular Nutrition & Food Research 66 (11), 2101091, 2022
Global and temporal state of the human gut microbiome in health and disease
S Shoaie, S Lee, M Almeida, G Bidkhori, N Pons, F Onate, E Chatelier, ...
Recovery of metagenome-assembled genomes from a human fecal sample with pacific biosciences high-fidelity sequencing
F Plaza Oņate, H Roume, M Almeida
Microbiology Resource Announcements 11 (6), e00250-22, 2022
Changes in gut microbiota of patients with atopic dermatitis during balneotherapy
F Thirion, S Guilly, S Fromentin, F Plaza Oņate, AS Alvarez, ...
Clinical, Cosmetic and Investigational Dermatology, 163-176, 2022
Draft Genome Sequence of Isolate POC01, a Novel Anaerobic Member of the Oscillospiraceae Family, Isolated from Human Feces
V Meslier, F Plaza Oņate, M Ania, M Nehlich, I Belotserkovsky, S Bellais, ...
Microbiology Resource Announcements 11 (1), e01134-21, 2022
High engraftment capacity of frozen ready-to-use human fecal microbiota transplants assessed in germ-free mice
M Berland, J Cadiou, F Levenez, N Galleron, B Quinquis, F Thirion, ...
Scientific Reports 11 (1), 4365, 2021
Adlercreutzia equolifaciens Is an Anti-Inflammatory Commensal Bacterium with Decreased Abundance in Gut Microbiota of Patients with Metabolic Liver Disease
FP Oņate, C Chamignon, SD Burz, N Lapaque, M Monnoye, C Philippe, ...
International Journal of Molecular Sciences 24 (15), 12232, 2023
Driving gut microbiota enterotypes through host genetics
C Larzul, J Estellé, M Borey, F Blanc, G Lemonnier, Y Billon, MG Thiam, ...
Towards a machine learning approach for automated detection of well-to-well contamination in metagenomics data
L Goulet, FP Oņate, E Prifti, E Belda, E Le Chatelier, G Gautreau
Congrčs Junior Pluridisciplinaire 2023, 2023
In Vitro Modelling of Oral Microbial Invasion in the Human Colon
L Etienne-Mesmin, V Meslier, O Uriot, E Fournier, C Deschamps, S Denis, ...
Microbiology Spectrum 11 (2), e04344-22, 2023
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