| MSPminer: abundance-based reconstitution of microbial pan-genomes from shotgun metagenomic data F Plaza Oņate, E Le Chatelier, M Almeida, ACL Cervino, F Gauthier, ... Bioinformatics 35 (9), 1544-1552, 2019 | 91 | 2019 |
| A natural polyphenol exerts antitumor activity and circumvents anti–PD-1 resistance through effects on the gut microbiota M Messaoudene, R Pidgeon, C Richard, M Ponce, K Diop, M Benlaifaoui, ... Cancer Discovery 12 (4), 1070-1087, 2022 | 62 | 2022 |
| Impact of laparoscopic Roux-en-Y gastric bypass and sleeve gastrectomy on gut microbiota: a metagenomic comparative analysis W Farin, F Plaza Oņate, J Plassais, C Bonny, C Beglinger, ... Surgery for Obesity and Related Diseases 16 (7), 852-862, 2020 | 38 | 2020 |
| Quality control of microbiota metagenomics by k-mer analysis F Plaza Onate, JM Batto, C Juste, J Fadlallah, C Fougeroux, D Gouas, ... BMC genomics 16 (1), 183, 2015 | 33 | 2015 |
| Benchmarking second and third-generation sequencing platforms for microbial metagenomics V Meslier, B Quinquis, K Da Silva, F Plaza Oņate, N Pons, H Roume, ... Scientific Data 9 (1), 694, 2022 | 10 | 2022 |
| Alteration of gut microbiome in patients with schizophrenia indicates links between bacterial tyrosine biosynthesis and cognitive dysfunction F Thirion, H Speyer, TH Hansen, T Nielsen, Y Fan, E Le Chatelier, ... Biological psychiatry global open science 3 (2), 283-291, 2023 | 9 | 2023 |
| Both disease activity and HLA–B27 status are associated with gut microbiome dysbiosis in spondyloarthritis patients M Berland, V Meslier, S Berreira Ibraim, E Le Chatelier, N Pons, ... Arthritis & Rheumatology 75 (1), 41-52, 2023 | 9* | 2023 |
| The effects of Aronia berry (poly) phenol supplementation on arterial function and the gut microbiome in middle aged men and women: Results from a randomized controlled trial M Le Sayec, Y Xu, M Laiola, FA Gallego, D Katsikioti, C Durbidge, ... Clinical Nutrition 41 (11), 2549-2561, 2022 | 8 | 2022 |
| StrainFLAIR: strain-level profiling of metagenomic samples using variation graphs K Da Silva, N Pons, M Berland, FP Oņate, M Almeida, P Peterlongo PeerJ 9, e11884, 2021 | 6 | 2021 |
| The reactobiome unravels a new paradigm in human gut microbiome metabolism G Bidkhori, S Lee, LA Edwards, EL Chatelier, M Almeida, B Ezzamouri, ... bioRxiv, 2021.02. 01.428114, 2021 | 6 | 2021 |
| Diet Supplementation with NUTRIOSE, a Resistant Dextrin, Increases the Abundance of Parabacteroides distasonis in the Human Gut F Thirion, K Da Silva, F Plaza Oņate, AS Alvarez, C Thabuis, N Pons, ... Molecular Nutrition & Food Research 66 (11), 2101091, 2022 | 5 | 2022 |
| Global and temporal state of the human gut microbiome in health and disease S Shoaie, S Lee, M Almeida, G Bidkhori, N Pons, F Onate, E Chatelier, ... | 3 | 2021 |
| Recovery of metagenome-assembled genomes from a human fecal sample with pacific biosciences high-fidelity sequencing F Plaza Oņate, H Roume, M Almeida Microbiology Resource Announcements 11 (6), e00250-22, 2022 | 2 | 2022 |
| Changes in gut microbiota of patients with atopic dermatitis during balneotherapy F Thirion, S Guilly, S Fromentin, F Plaza Oņate, AS Alvarez, ... Clinical, Cosmetic and Investigational Dermatology, 163-176, 2022 | 2 | 2022 |
| Draft Genome Sequence of Isolate POC01, a Novel Anaerobic Member of the Oscillospiraceae Family, Isolated from Human Feces V Meslier, F Plaza Oņate, M Ania, M Nehlich, I Belotserkovsky, S Bellais, ... Microbiology Resource Announcements 11 (1), e01134-21, 2022 | 1 | 2022 |
| High engraftment capacity of frozen ready-to-use human fecal microbiota transplants assessed in germ-free mice M Berland, J Cadiou, F Levenez, N Galleron, B Quinquis, F Thirion, ... Scientific Reports 11 (1), 4365, 2021 | 1 | 2021 |
| Adlercreutzia equolifaciens Is an Anti-Inflammatory Commensal Bacterium with Decreased Abundance in Gut Microbiota of Patients with Metabolic Liver Disease FP Oņate, C Chamignon, SD Burz, N Lapaque, M Monnoye, C Philippe, ... International Journal of Molecular Sciences 24 (15), 12232, 2023 | | 2023 |
| Driving gut microbiota enterotypes through host genetics C Larzul, J Estellé, M Borey, F Blanc, G Lemonnier, Y Billon, MG Thiam, ... | | 2023 |
| Towards a machine learning approach for automated detection of well-to-well contamination in metagenomics data L Goulet, FP Oņate, E Prifti, E Belda, E Le Chatelier, G Gautreau Congrčs Junior Pluridisciplinaire 2023, 2023 | | 2023 |
| In Vitro Modelling of Oral Microbial Invasion in the Human Colon L Etienne-Mesmin, V Meslier, O Uriot, E Fournier, C Deschamps, S Denis, ... Microbiology Spectrum 11 (2), e04344-22, 2023 | | 2023 |
Le Chatelier EmmanuelleVerified email at inrae.fr
