Rutger A. Vos

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Olaf R.P. Bininda-EmondsProfessor of Molecular Systematics, University of OldenburgVerified email at uni-oldenburg.de
Marcel CardilloProfessor, Australian National UniversityVerified email at anu.edu.au
Ross MacPheeCurator of Mammals, American Museum of Natural HistoryVerified email at amnh.org
Samantha A. PriceBiological Sciences, Clemson UniversityVerified email at clemson.edu
John GittlemanUniversity of GeorgiaVerified email at uga.edu
Kate Elizabeth JonesProfessor Ecology and Biodiversity, University College LondonVerified email at ucl.ac.uk
Robin BeckReader in Biology, University of SalfordVerified email at salford.ac.uk
Richard GrenyerUniversity of OxfordVerified email at ouce.ox.ac.uk
Arlin StoltzfusNIST, IBBR, UMDVerified email at umd.edu
Barbara GravendeelProfessor at RIBES Radboud University and Naturalis Biodiversity CenterVerified email at naturalis.nl
Hilmar LappDirector of Informatics, Center for Genomic and Computational Biology, Duke UniversityVerified email at duke.edu
Tandy WarnowGrainger Distinguished Chair in Engineering, UIUCVerified email at illinois.edu
Peter MidfordSRI InternationalVerified email at ai.sri.com
William H. PielYale-NUS CollegeVerified email at yale-nus.edu.sg
Alexandre AntonelliRoyal Botanic Gardens, KewVerified email at kew.org
Hannes HettlingNaturalis Biodiversity CenterVerified email at naturalis.nl
Vincent S.F.T. MerckxGroup Leader of Understanding Evolution, Naturalis Biodiversity CenterVerified email at naturalis.nl
Enrico PontelliNew Mexico State UniversityVerified email at cs.nmsu.edu
Daniele SilvestroUniversity of Fribourg (Switzerland)Verified email at unifr.ch
Michael J. SandersonProfessor of Ecology and Evolutionary Biology, University of ArizonaVerified email at email.arizona.edu

Rutger A. Vos

Naturalis Biodiversity Center

Verified email at naturalis.nl

evolution / bioinformatics / data science


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The delayed rise of present-day mammals ORP Bininda-Emonds, M Cardillo, KE Jones, RDE MacPhee, RMD Beck, ... Nature 446 (7135), 507-512, 2007	2189	2007
The CIPRES Portals MA Miller, MT Holder, R Vos, PE Midford, T Liebowitz, L Chan, P Hoover, ... http://www. phylo. org/sub_sections/portal., 2009	565*	2009
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system FJ Vonk, NR Casewell, CV Henkel, AM Heimberg, HJ Jansen, ... Proceedings of the National Academy of Sciences 110 (51), 20651-20656, 2013	485	2013
Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole‐genome sequencing 100 Tomato Genome Sequencing Consortium, S Aflitos, E Schijlen, ... The Plant Journal 80 (1), 136-148, 2014	411	2014
Species-level para-and polyphyly in DNA barcode gene trees: strong operational bias in European Lepidoptera M Mutanen, SM Kivelä, RA Vos, C Doorenweerd, S Ratnasingham, ... Systematic biology 65 (6), 1024-1040, 2016	180	2016
Declines in moth populations stress the need for conserving dark nights F van Langevelde, M Braamburg-Annegarn, ME Huigens, R Groendijk, ... Global Change Biology, 2017	122	2017
TreeBASE v. 2: A Database of Phylogenetic Knowledge WH Piel, L Chan, MJ Dominus, J Ruan, RA Vos, V Tannen	113*	2009
Accelerated likelihood surface exploration: the likelihood ratchet RA Vos Systematic biology 52 (3), 368-373, 2003	109	2003
Algorithmic single-locus species delimitation: effects of sampling effort, variation and non-monophyly in four methods and 1870 species of beetles M Pentinsaari, R Vos, M Mutanen Molecular Ecology Resources, 2016	107	2016
NeXML: rich, extensible, and verifiable representation of comparative data and metadata RA Vos, JP Balhoff, JA Caravas, MT Holder, H Lapp, WP Maddison, ... Systematic biology 61 (4), 675-689, 2012	103	2012
Erratum: The delayed rise of present-day mammals ORP Bininda-Emonds, M Cardillo, KE Jones, RDE MacPhee, RMD Beck, ... Nature 456 (7219), 274-274, 2008	83*	2008
Evolutionary dynamics of mycorrhizal symbiosis in land plant diversification FAA Feijen, RA Vos, J Nuytinck, VSFT Merckx Scientific Reports 8 (1), 10698, 2018	69	2018
Toward a self-updating platform for estimating rates of speciation and migration, ages, and relationships of taxa A Antonelli, H Hettling, FL Condamine, K Vos, RH Nilsson, MJ Sanderson, ... Systematic biology 66 (2), 152-166, 2017	67*	2017
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. T Katayama, MD Wilkinson, KF Aoki-Kinoshita, S Kawashima, ... Journal of biomedical semantics 5, 5, 2014	66	2014
Bio::Phylo-phyloinformatic analysis using perl R Vos, J Caravas, K Hartmann, M Jensen, C Miller BMC bioinformatics 12 (1), 63, 2011	57	2011
Sharing and re-use of phylogenetic trees (and associated data) to facilitate synthesis A Stoltzfus, B O'meara, J Whitacre, R Mounce, EL Gillespie, S Kumar, ... BMC Research Notes 5, 1-15, 2012	53	2012
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. T Katayama, K Arakawa, M Nakao, K Ono, KF Aoki-Kinoshita, ... Journal of biomedical semantics 1, 8, 2010	52	2010
The 2006 NESCent phyloinformatics hackathon: A field report H Lapp, S Bala, JP Balhoff, A Bouck, N Goto, M Holder, R Holland, ... Evolutionary Bioinformatics Online 3, 287, 2007	50	2007
The 3rd DBCLS BioHackathon: improving life science data integration with semantic Web technologies T Katayama, MD Wilkinson, G Micklem, S Kawashima, A Yamaguchi, ... Journal of Biomedical Semantics 4 (1), 6, 2013	47	2013
The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants R Hoehndorf, M Alshahrani, GV Gkoutos, G Gosline, Q Groom, T Hamann, ... Journal of biomedical semantics 7 (1), 1-11, 2016	45	2016

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