Prati
Genki Terashi
Genki Terashi
Assistant research scientist, Department of Biological Sciences, Purdue University
Potvrđena adresa e-pošte na purdue.edu
Naslov
Citirano
Citirano
Godina
Community-wide assessment of protein-interface modeling suggests improvements to design methodology
SJ Fleishman, TA Whitehead, EM Strauch, JE Corn, S Qin, HX Zhou, ...
Journal of molecular biology 414 (2), 289-302, 2011
1502011
Community‐wide evaluation of methods for predicting the effect of mutations on protein–protein interactions
R Moretti, SJ Fleishman, R Agius, M Torchala, PA Bates, PL Kastritis, ...
Proteins: Structure, Function, and Bioinformatics 81 (11), 1980-1987, 2013
1022013
Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment
MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ...
Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019
802019
De novo main-chain modeling for EM maps using MAINMAST
G Terashi, D Kihara
Nature communications 9 (1), 1618, 2018
742018
Protein docking model evaluation by 3D deep convolutional neural networks
X Wang, G Terashi, CW Christoffer, M Zhu, D Kihara
Bioinformatics 36 (7), 2113-2118, 2020
522020
Protein secondary structure detection in intermediate-resolution cryo-EM maps using deep learning
SR Maddhuri Venkata Subramaniya, G Terashi, D Kihara
Nature methods 16 (9), 911-917, 2019
522019
Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge
CL Lawson, A Kryshtafovych, PD Adams, PV Afonine, ML Baker, ...
Nature methods 18 (2), 156-164, 2021
482021
Modeling disordered protein interactions from biophysical principles
LX Peterson, A Roy, C Christoffer, G Terashi, D Kihara
PLoS computational biology 13 (4), e1005485, 2017
442017
Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment
MF Lensink, G Brysbaert, T Mauri, N Nadzirin, S Velankar, RAG Chaleil, ...
Proteins: Structure, Function, and Bioinformatics 89 (12), 1800-1823, 2021
332021
The SKE‐DOCK server and human teams based on a combined method of shape complementarity and free energy estimation
G Terashi, M Takeda‐Shitaka, K Kanou, M Iwadate, D Takaya, ...
Proteins: Structure, Function, and Bioinformatics 69 (4), 866-872, 2007
322007
Fams‐ace: A combined method to select the best model after remodeling all server models
G Terashi, M Takeda‐Shitaka, K Kanou, M Iwadate, D Takaya, A Hosoi, ...
Proteins: Structure, Function, and Bioinformatics 69 (S8), 98-107, 2007
322007
Bioinformatics based Ligand-Docking and in-silico screening
D Takaya, M Takeda-Shitaka, G Terashi, K Kanou, M Iwadate, ...
Chemical and Pharmaceutical Bulletin 56 (5), 742-744, 2008
272008
Modeling the assembly order of multimeric heteroprotein complexes
LX Peterson, Y Togawa, J Esquivel-Rodriguez, G Terashi, C Christoffer, ...
PLoS computational biology 14 (1), e1005937, 2018
252018
Detecting protein and DNA/RNA structures in cryo-EM maps of intermediate resolution using deep learning
X Wang, E Alnabati, TW Aderinwale, SR Maddhuri Venkata Subramaniya, ...
Nature Communications 12 (1), 2302, 2021
232021
De novo main-chain modeling with MAINMAST in 2015/2016 EM Model Challenge
G Terashi, D Kihara
Journal of structural biology 204 (2), 351-359, 2018
192018
Human and server docking prediction for CAPRI round 30‐35 using LZerD with combined scoring functions
LX Peterson, H Kim, J Esquivel‐Rodriguez, A Roy, X Han, WH Shin, ...
Proteins: Structure, Function, and Bioinformatics 85 (3), 513-527, 2017
172017
Analyzing effect of quadruple multiple sequence alignments on deep learning based protein inter-residue distance prediction
A Jain, G Terashi, Y Kagaya, SR Maddhuri Venkata Subramaniya, ...
Scientific Reports 11 (1), 7574, 2021
162021
Real-time structure search and structure classification for AlphaFold protein models
T Aderinwale, V Bharadwaj, C Christoffer, G Terashi, Z Zhang, ...
Communications Biology 5 (1), 316, 2022
152022
Protein structure model refinement in CASP12 using short and long molecular dynamics simulations in implicit solvent
G Terashi, D Kihara
Proteins: Structure, Function, and Bioinformatics 86, 189-201, 2018
152018
Searching for protein–protein interaction sites and docking by the methods of molecular dynamics, grid scoring, and the pairwise interaction potential of amino acid residues
G Terashi, M Takeda‐Shitaka, D Takaya, K Komatsu, H Umeyama
PROTEINS: Structure, Function, and Bioinformatics 60 (2), 289-295, 2005
152005
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