Gipsi Lima Mendez
Gipsi Lima Mendez
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Structure and function of the global ocean microbiome
S Sunagawa, LP Coelho, S Chaffron, JR Kultima, K Labadie, G Salazar, ...
Science 348 (6237), 1261359, 2015
Population-level analysis of gut microbiome variation
G Falony, M Joossens, S Vieira-Silva, J Wang, Y Darzi, K Faust, ...
Science 352 (6285), 560-564, 2016
Eukaryotic plankton diversity in the sunlit ocean
C De Vargas, S Audic, N Henry, J Decelle, F Mahé, R Logares, E Lara, ...
Science 348 (6237), 1261605, 2015
Determinants of community structure in the global plankton interactome
G Lima-Mendez, K Faust, N Henry, J Decelle, S Colin, F Carcillo, ...
Science 348 (6237), 1262073, 2015
A holistic approach to marine eco-systems biology
E Karsenti, SG Acinas, P Bork, C Bowler, C De Vargas, J Raes, M Sullivan, ...
PLoS biology 9 (10), e1001177, 2011
Metagenomic 16S rDNA I llumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities
R Logares, S Sunagawa, G Salazar, FM Cornejo‐Castillo, I Ferrera, ...
Environmental microbiology 16 (9), 2659-2671, 2014
ACLAME: a CLAssification of Mobile genetic Elements, update 2010
R Leplae, G Lima-Mendez, A Toussaint
Nucleic acids research 38 (suppl_1), D57-D61, 2010
A global ocean atlas of eukaryotic genes
Q Carradec, E Pelletier, C Da Silva, A Alberti, Y Seeleuthner, ...
Nature communications 9 (1), 373, 2018
Species–function relationships shape ecological properties of the human gut microbiome
S Vieira-Silva, G Falony, Y Darzi, G Lima-Mendez, R Garcia Yunta, ...
Nature microbiology 1 (8), 1-8, 2016
Reticulate representation of evolutionary and functional relationships between phage genomes
G Lima-Mendez, J Van Helden, A Toussaint, R Leplae
Molecular biology and evolution 25 (4), 762-777, 2008
The powerful law of the power law and other myths in network biology
G Lima-Mendez, J Van Helden
Molecular BioSystems 5 (12), 1482-1493, 2009
Prophinder: a computational tool for prophage prediction in prokaryotic genomes
G Lima-Mendez, J Van Helden, A Toussaint, R Leplae
Bioinformatics 24 (6), 863-865, 2008
Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes
P Hingamp, N Grimsley, SG Acinas, C Clerissi, L Subirana, J Poulain, ...
The ISME journal 7 (9), 1678-1695, 2013
Population-level analysis of Blastocystis subtype prevalence and variation in the human gut microbiota
RY Tito, S Chaffron, C Caenepeel, G Lima-Mendez, J Wang, ...
Gut 68 (7), 1180-1189, 2019
Cross-biome comparison of microbial association networks
K Faust, G Lima-Mendez, JS Lerat, JF Sathirapongsasuti, R Knight, ...
Frontiers in microbiology 6, 1200, 2015
Tara Oceans coordinators
S Sunagawa, LP Coelho, S Chaffron, JR Kultima, K Labadie, G Salazar, ...
Bowler C, de Vargas C, Gorsky G, Grimsley N, Hingamp P, Iudicone D, Jaillon …, 2015
Network Analysis Tools: from biological networks to clusters and pathways
S Brohée, K Faust, G Lima-Mendez, G Vanderstocken, J Van Helden
Nature protocols 3 (10), 1616-1629, 2008
NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways
S Brohee, K Faust, G Lima-Mendez, O Sand, R Janky, G Vanderstocken, ...
Nucleic acids research 36 (suppl_2), W444-W451, 2008
Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities
SG Acinas, P Sánchez, G Salazar, FM Cornejo-Castillo, M Sebastián, ...
Communications Biology 4 (1), 604, 2021
Community‐level responses to iron availability in open ocean plankton ecosystems
L Caputi, Q Carradec, D Eveillard, A Kirilovsky, E Pelletier, ...
Global Biogeochemical Cycles 33 (3), 391-419, 2019
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