| Structure and function of the global ocean microbiome S Sunagawa, LP Coelho, S Chaffron, JR Kultima, K Labadie, G Salazar, ... Science 348 (6237), 1261359, 2015 | 2439 | 2015 |
| Population-level analysis of gut microbiome variation G Falony, M Joossens, S Vieira-Silva, J Wang, Y Darzi, K Faust, ... Science 352 (6285), 560-564, 2016 | 2154 | 2016 |
| Eukaryotic plankton diversity in the sunlit ocean C De Vargas, S Audic, N Henry, J Decelle, F Mahé, R Logares, E Lara, ... Science 348 (6237), 1261605, 2015 | 1773 | 2015 |
| Determinants of community structure in the global plankton interactome G Lima-Mendez, K Faust, N Henry, J Decelle, S Colin, F Carcillo, ... Science 348 (6237), 1262073, 2015 | 878 | 2015 |
| A holistic approach to marine eco-systems biology E Karsenti, SG Acinas, P Bork, C Bowler, C De Vargas, J Raes, M Sullivan, ... PLoS biology 9 (10), e1001177, 2011 | 471 | 2011 |
| Metagenomic 16S rDNA I llumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities R Logares, S Sunagawa, G Salazar, FM Cornejo‐Castillo, I Ferrera, ... Environmental microbiology 16 (9), 2659-2671, 2014 | 380 | 2014 |
| Species–function relationships shape ecological properties of the human gut microbiome S Vieira-Silva, G Falony, Y Darzi, G Lima-Mendez, R Garcia Yunta, ... Nature microbiology 1 (8), 1-8, 2016 | 344 | 2016 |
| A global ocean atlas of eukaryotic genes Q Carradec, E Pelletier, C Da Silva, A Alberti, Y Seeleuthner, ... Nature communications 9 (1), 373, 2018 | 334 | 2018 |
| ACLAME: a CLAssification of Mobile genetic Elements, update 2010 R Leplae, G Lima-Mendez, A Toussaint Nucleic acids research 38 (suppl_1), D57-D61, 2010 | 319 | 2010 |
| Reticulate representation of evolutionary and functional relationships between phage genomes G Lima-Mendez, J Van Helden, A Toussaint, R Leplae Molecular biology and evolution 25 (4), 762-777, 2008 | 264 | 2008 |
| The powerful law of the power law and other myths in network biology G Lima-Mendez, J Van Helden Molecular BioSystems 5 (12), 1482-1493, 2009 | 259 | 2009 |
| Prophinder: a computational tool for prophage prediction in prokaryotic genomes G Lima-Mendez, J Van Helden, A Toussaint, R Leplae Bioinformatics 24 (6), 863-865, 2008 | 243 | 2008 |
| Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes P Hingamp, N Grimsley, SG Acinas, C Clerissi, L Subirana, J Poulain, ... The ISME journal 7 (9), 1678-1695, 2013 | 224 | 2013 |
| Population-level analysis of Blastocystis subtype prevalence and variation in the human gut microbiota RY Tito, S Chaffron, C Caenepeel, G Lima-Mendez, J Wang, ... Gut 68 (7), 1180-1189, 2019 | 191 | 2019 |
| Cross-biome comparison of microbial association networks K Faust, G Lima-Mendez, JS Lerat, JF Sathirapongsasuti, R Knight, ... Frontiers in microbiology 6, 1200, 2015 | 169 | 2015 |
| Tara Oceans coordinators S Sunagawa, LP Coelho, S Chaffron, JR Kultima, K Labadie, G Salazar, ... Bowler C, de Vargas C, Gorsky G, Grimsley N, Hingamp P, Iudicone D, Jaillon …, 2015 | 148 | 2015 |
| Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities SG Acinas, P Sánchez, G Salazar, FM Cornejo-Castillo, M Sebastián, ... Communications biology 4 (1), 604, 2021 | 138 | 2021 |
| Network Analysis Tools: from biological networks to clusters and pathways S Brohée, K Faust, G Lima-Mendez, G Vanderstocken, J Van Helden Nature protocols 3 (10), 1616-1629, 2008 | 125 | 2008 |
| NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways S Brohee, K Faust, G Lima-Mendez, O Sand, R Janky, G Vanderstocken, ... Nucleic acids research 36 (suppl_2), W444-W451, 2008 | 124 | 2008 |
| Community‐level responses to iron availability in open ocean plankton ecosystems L Caputi, Q Carradec, D Eveillard, A Kirilovsky, E Pelletier, ... Global Biogeochemical Cycles 33 (3), 391-419, 2019 | 87 | 2019 |
