Junjie Zhu

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Bo WangChief AI Scientist,UHN; CIFAR AI Chair, Vector Institute; Assistant Professor, U of TorontoVerified email at vectorinstitute.ai
Serafim BatzoglouSeerVerified email at seer.bio
Daniele RamazzottiDepartment of Medicine and Surgery, University of Milano-Bicocca, Milano, ItalyVerified email at unimib.it
Emma PiersonCornell TechVerified email at cornell.edu
Chiara SabattiProfessor of Biomedical Data Science and of Statistics, Stanford UniversityVerified email at stanford.edu
Marinka ZitnikAssistant Professor, Harvard UniversityVerified email at hms.harvard.edu
Jure LeskovecProfessor of Computer Science, Stanford UniversityVerified email at cs.stanford.edu
Weng Chuan PengPrincipal Investigator, Princess Maxima Center for Pediatric Oncology, The NetherlandsVerified email at prinsesmaximacentrum.nl
Nathaniel KarstBabson College, Division of Mathematics and ScienceVerified email at babson.edu
Zhongming ZhaoUniversity of Texas Health Science Center at HoustonVerified email at uth.tmc.edu
Eugene KatsevichAssistant Professor, Wharton Statistics DepartmentVerified email at wharton.upenn.edu
Noura HowellDigital Media, Georgia TechVerified email at gatech.edu
Grace X.Y. ZhengArsenal BiosciencesVerified email at arsenalbio.com
Raymond LouieUniversity of New South WalesVerified email at unsw.edu.au
Matthew R. McKayProfessor, ARC Future Fellow, University of MelbourneVerified email at unimelb.edu.au
J.T. NealBroad Institute of MIT and HarvardVerified email at broadinstitute.org
Mark M. DavisStanford UniversityVerified email at stanford.edu

Junjie Zhu

Apple Inc.

Verified email at stanford.edu - Homepage

Statistics Machine Learning Graph Theory Bioinformatics


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Massively parallel digital transcriptional profiling of single cells GXY Zheng, JM Terry, P Belgrader, P Ryvkin, ZW Bent, R Wilson, ... Nature communications 8 (1), 14049, 2017	5888	2017
Organoid modeling of the tumor immune microenvironment JT Neal, X Li, J Zhu, V Giangarra, CL Grzeskowiak, J Ju, IH Liu, SH Chiou, ... Cell 175 (7), 1972-1988. e16, 2018	1186	2018
Visualization and analysis of single-cell RNA-seq data by kernel-based similarity learning B Wang, J Zhu, E Pierson, D Ramazzotti, S Batzoglou Nature methods 14 (4), 414-416, 2017	689	2017
Network Enhancement: a general method to denoise weighted biological networks B Wang, A Pourshafeie, M Zitnik, J Zhu, CD Bustamante, S Batzoglou, ... Nature Communications 9 (1), 3108, 2018	440	2018
Progenitor identification and SARS-CoV-2 infection in human distal lung organoids AA Salahudeen, SS Choi, A Rustagi, J Zhu, V van Unen, SM de la O, ... Nature 588 (7839), 670-675, 2020	357	2020
Inflammatory cytokine TNFα promotes the long-term expansion of primary hepatocytes in 3D culture WC Peng, CY Logan, M Fish, T Anbarchian, F Aguisanda, ... Cell 175 (6), 1607-1619. e15, 2018	281	2018
Assessment of network module identification across complex diseases S Choobdar, ME Ahsen, J Crawford, M Tomasoni, T Fang, D Lamparter, ... Nature methods 16 (9), 843-852, 2019	270	2019
scRNASeqDB: a database for RNA-Seq based gene expression profiles in human single cells Y Cao, J Zhu, P Jia, Z Zhao Genes 8 (12), 368, 2017	95	2017
SIMLR: A tool for large‐scale genomic analyses by multi‐kernel learning B Wang, D Ramazzotti, L De Sano, J Zhu, E Pierson, S Batzoglou Proteomics 18 (2), 1700232, 2018	94	2018
Exploratory gene ontology analysis with interactive visualization J Zhu, Q Zhao, E Katsevich, C Sabatti Scientific reports 9 (1), 7793, 2019	23	2019
Integrative spatial single-cell analysis with graph-based feature learning J Zhu, C Sabatti Biorxiv, 2020.08. 12.248971, 2020	19	2020
Selection-adjusted inference: an application to confidence intervals for cis-eQTL effect sizes S Panigrahi, J Zhu, C Sabatti Biostatistics, 2018	14	2018
SIMLR: a tool for large-scale single-cell analysis by multi-kernel learning B Wang, D Ramazzotti, L De Sano, J Zhu, E Pierson, S Batzoglou BioRxiv, 118901, 2017	13	2017
L (d, 1)-labelings of the ege-path-replacement by factorization of graphs N Karst, J Oehrlein, DS Troxell, J Zhu Journal of Combinatorial Optimization 30 (1), 34-41, 2015	13	2015
Water detection with high-resolution SAR image based on texture and imaging knowledge J ZHU, H GUO, X FAN, C DING, L LI, Y LI Advances in Water Science 17 (4), 525-530, 2006	10*	2006
Asymmetric total synthesis of (+)-Minfiensine by an asymmetric cascade cyclization strategy ZX Zhang, SC Chen, L Jiao Synlett 28 (17), 2199-2204, 2017	9	2017
OS de la, RA Flynn, M AA Salahudeen, SS Choi, A Rustagi, J Zhu, V van Unen bioRxiv, 2020	8	2020
Unsupervised learning from noisy networks with applications to hi-c data B Wang, J Zhu, A Pourshafeie, O Ursu, S Batzoglou, A Kundaje Advances in Neural Information Processing Systems 29, 2016	7	2016
On the L (2, 1)-labelings of amalgamations of graphs SS Adams, N Howell, N Karst, DS Troxell, J Zhu Discrete Applied Mathematics 161 (7-8), 881-888, 2013	7	2013
The minimum span of L (2, 1)-labelings of generalized flowers N Karst, J Oehrlein, DS Troxell, J Zhu Discrete Applied Mathematics 181, 139-151, 2015	6	2015

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