Witold Eryk Wolski
Witold Eryk Wolski
Functional Genomics Center Zurich
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OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data
HL Röst, G Rosenberger, P Navarro, L Gillet, SM Miladinović, ...
Nature biotechnology 32 (3), 219-223, 2014
OpenMS: a flexible open-source software platform for mass spectrometry data analysis
HL Röst, T Sachsenberg, S Aiche, C Bielow, H Weisser, F Aicheler, ...
Nature methods 13 (9), 741-748, 2016
Normalization strategies for cDNA microarrays
J Schuchhardt, D Beule, A Malik, E Wolski, H Eickhoff, H Lehrach, ...
Nucleic Acids Research 28 (10), e47-e47, 2000
Rapid mass spectrometric conversion of tissue biopsy samples into permanent quantitative digital proteome maps
T Guo, P Kouvonen, CC Koh, LC Gillet, WE Wolski, HL Röst, ...
Nature medicine 21 (4), 407-413, 2015
Building high-quality assay libraries for targeted analysis of SWATH MS data
OT Schubert, LC Gillet, BC Collins, P Navarro, G Rosenberger, WE Wolski, ...
Nature protocols 10 (3), 426-441, 2015
Systems proteomics of liver mitochondria function
EG Williams, Y Wu, P Jha, S Dubuis, P Blattmann, CA Argmann, ...
Science 352 (6291), aad0189, 2016
Normalization in MALDI-TOF imaging datasets of proteins: practical considerations
SO Deininger, DS Cornett, R Paape, M Becker, C Pineau, S Rauser, ...
Analytical and bioanalytical chemistry 401, 167-181, 2011
Multilayered genetic and omics dissection of mitochondrial activity in a mouse reference population
Y Wu, EG Williams, S Dubuis, A Mottis, V Jovaisaite, SM Houten, ...
Cell 158 (6), 1415-1430, 2014
The SysteMHC atlas project
W Shao, PGA Pedrioli, W Wolski, C Scurtescu, E Schmid, JA Vizcaíno, ...
Nucleic acids research 46 (D1), D1237-D1247, 2018
Analysis of differential gene expression in stretched podocytes: osteopontin enhances adaptation of podocytes to mechanical stress
N Endlich, M Sunohara, W Nietfeld, EW Wolski, D Schiwek, B Kränzlin, ...
The FASEB Journal 16 (13), 1-24, 2002
Targeted proteomics guided by label-free quantitative proteome analysis in saliva reveal transition signatures from health to periodontal disease
N Bostanci, N Selevsek, W Wolski, J Grossmann, K Bao, A Wahlander, ...
Molecular & Cellular Proteomics 17 (7), 1392-1409, 2018
Tissue gene expression analysis using arrayed normalized cDNA libraries
H Eickhoff, J Schuchhardt, I Ivanov, S Meier-Ewert, J O'Brien, A Malik, ...
Genome research 10 (8), 1230-1240, 2000
Epigenetics and proteomics join transcriptomics in the quest for tuberculosis biomarkers
MM Esterhuyse, J Weiner 3rd, E Caron, AG Loxton, M Iannaccone, ...
MBio 6 (5), 10.1128/mbio. 01187-15, 2015
APOE2, E3, and E4 differentially modulate cellular homeostasis, cholesterol metabolism, and inflammatory response in isogenic iPSC-derived astrocytes
SM de Leeuw, AWT Kirschner, K Lindner, R Rust, V Budny, WE Wolski, ...
Stem cell reports 17 (1), 110-126, 2022
Quantifying and localizing the mitochondrial proteome across five tissues in a mouse population
EG Williams, Y Wu, W Wolski, JY Kim, J Lan, M Hasan, C Halter, P Jha, ...
Molecular & Cellular Proteomics 17 (9), 1766-1777, 2018
Targeted proteomics coming of age–SRM, PRM and DIA performance evaluated from a core facility perspective
T Kockmann, C Trachsel, C Panse, A Wahlander, N Selevsek, ...
Proteomics 16 (15-16), 2183-2192, 2016
iPortal: the swiss grid proteomics portal: Requirements and new features based on experience and usability considerations
P Kunszt, L Blum, B Hullár, E Schmid, A Srebniak, W Wolski, B Rinn, ...
Concurrency and Computation: Practice and Experience 27 (2), 433-445, 2015
Brain Citrullination Patterns and T Cell Reactivity of Cerebrospinal Fluid-Derived CD4+ T Cells in Multiple Sclerosis
W Faigle, C Cruciani, W Wolski, B Roschitzki, M Puthenparampil, ...
Frontiers in immunology 10, 540, 2019
Analytical model of peptide mass cluster centres with applications
WE Wolski, M Farrow, AK Emde, H Lehrach, M Lalowski, K Reinert
Proteome science 4, 1-19, 2006
BAF complexes drive proliferation and block myogenic differentiation in fusion-positive rhabdomyosarcoma
D Laubscher, BE Gryder, BD Sunkel, T Andresson, M Wachtel, S Das, ...
Nature Communications 12 (1), 6924, 2021
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