Fergal J Duffy
Fergal J Duffy
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Four-gene pan-African blood signature predicts progression to tuberculosis
S Suliman, EG Thompson, J Sutherland, J Weiner 3rd, MOC Ota, ...
American journal of respiratory and critical care medicine 197 (9), 1198-1208, 2018
Metabolite changes in blood predict the onset of tuberculosis
J Weiner 3rd, J Maertzdorf, JS Sutherland, FJ Duffy, E Thompson, ...
Nature communications 9 (1), 5208, 2018
Linking EPCR-binding PfEMP1 to brain swelling in pediatric cerebral malaria
A Kessler, S Dankwa, M Bernabeu, V Harawa, SA Danziger, F Duffy, ...
Cell host & microbe 22 (5), 601-614. e5, 2017
Plasma N-glycans in colorectal cancer risk
M Doherty, E Theodoratou, I Walsh, B Adamczyk, H Stöckmann, F Agakov, ...
Scientific reports 8 (1), 8655, 2018
Ultra-low dose aerosol infection of mice with Mycobacterium tuberculosis more closely models human tuberculosis
CR Plumlee, FJ Duffy, BH Gern, JL Delahaye, SB Cohen, CR Stoltzfus, ...
Cell host & microbe 29 (1), 68-82. e5, 2021
Detection of tuberculosis recurrence, diagnosis and treatment response by a blood transcriptomic risk signature in HIV-infected persons on antiretroviral therapy
F Darboe, SK Mbandi, K Naidoo, N Yende-Zuma, L Lewis, EG Thompson, ...
Frontiers in microbiology 10, 1441, 2019
Computational approaches to developing short cyclic peptide modulators of protein–protein interactions
FJ Duffy, M Devocelle, DC Shields
Computational Peptidology, 241-271, 2015
Immunometabolic signatures predict risk of progression to active tuberculosis and disease outcome
FJ Duffy, J Weiner III, S Hansen, DL Tabb, S Suliman, E Thompson, ...
Frontiers in immunology 10, 527, 2019
CycloPs: generating virtual libraries of cyclized and constrained peptides including nonnatural amino acids
FJ Duffy, M Verniere, M Devocelle, E Bernard, DC Shields, AJ Chubb
Journal of chemical information and modeling 51 (4), 829-836, 2011
A serum circulating miRNA signature for short-term risk of progression to active tuberculosis among household contacts
FJ Duffy, E Thompson, K Downing, S Suliman, H Mayanja-Kizza, ...
Frontiers in immunology 9, 661, 2018
Predicting binding within disordered protein regions to structurally characterised peptide-binding domains
W Khan, F Duffy, G Pollastri, DC Shields, C Mooney
PLoS One 8 (9), e72838, 2013
Contained Mycobacterium tuberculosis infection induces concomitant and heterologous protection
J Nemeth, GS Olson, AC Rothchild, AN Jahn, D Mai, FJ Duffy, ...
PLoS pathogens 16 (7), e1008655, 2020
Meta-analysis of Plasmodium falciparum var Signatures Contributing to Severe Malaria in African Children and Indian Adults
F Duffy, M Bernabeu, PH Babar, A Kessler, CW Wang, M Vaz, L Chery, ...
MBio 10 (2), 10.1128/mbio. 00217-19, 2019
Determinants of brain swelling in pediatric and adult cerebral malaria
PK Sahu, FJ Duffy, S Dankwa, M Vishnyakova, M Majhi, L Pirpamer, ...
JCI insight 6 (18), 2021
Multinomial modelling of TB/HIV co-infection yields a robust predictive signature and generates hypotheses about the HIV+ TB+ disease state
FJ Duffy, EG Thompson, TJ Scriba, DE Zak
PLoS One 14 (7), e0219322, 2019
Virtual screening using combinatorial cyclic peptide libraries reveals protein interfaces readily targetable by cyclic peptides
FJ Duffy, D O’Donovan, M Devocelle, N Moran, DJ O’Connell, DC Shields
Journal of Chemical Information and Modeling 55 (3), 600-613, 2015
Angiotensin II receptor I auto-antibodies following SARS-CoV-2 infection
Y Jiang, F Duffy, J Hadlock, A Raappana, S Styrchak, I Beck, FD Mast, ...
PLoS One 16 (11), e0259902, 2021
GlycoProfileAssigner: automated structural assignment with error estimation for glycan LC data
FJ Duffy, PM Rudd
Bioinformatics 31 (13), 2220-2221, 2015
Computational opportunities and challenges in finding cyclic peptide modulators of protein–protein interactions
F Duffy, N Maheshwari, NV Buchete, D Shields
Cyclic Peptide Design, 73-95, 2019
Preimmunization correlates of protection shared across malaria vaccine trials in adults
ML Neal, FJ Duffy, Y Du, JD Aitchison, KD Stuart
npj Vaccines 7 (1), 5, 2022
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