Prati
Olga Kalinina
Olga Kalinina
Helmholtz Institute for Pharmaceutical Research Saarland
Potvrđena adresa e-pošte na helmholtz-hzi.de - Početna stranica
Naslov
Citirano
Citirano
Godina
Impact of genome reduction on bacterial metabolism and its regulation
E Yus, T Maier, K Michalodimitrakis, V van Noort, T Yamada, WH Chen, ...
science 326 (5957), 1263-1268, 2009
3662009
Automated selection of positions determining functional specificity of proteins by comparative analysis of orthologous groups in protein families
OV Kalinina, AA Mironov, MS Gelfand, AB Rakhmaninova
Protein Science 13 (2), 443-456, 2004
1542004
SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins
OV Kalinina, PS Novichkov, AA Mironov, MS Gelfand, AB Rakhmaninova
Nucleic acids research 32 (suppl 2), W424-W428, 2004
1032004
Comparative genomics of regulation of heavy metal resistance in Eubacteria
EA Permina, AE Kazakov, OV Kalinina, MS Gelfand
BMC microbiology 6, 1-11, 2006
1022006
An automated stochastic approach to the identification of the protein specificity determinants and functional subfamilies
PV Mazin, MS Gelfand, AA Mironov, AB Rakhmaninova, AR Rubinov, ...
Algorithms for Molecular Biology 5, 1-12, 2010
692010
Systematic discovery of linear binding motifs targeting an ancient protein interaction surface on MAP kinases
A Zeke, T Bastys, A Alexa, Á Garai, B Mészáros, K Kirsch, Z Dosztányi, ...
Molecular systems biology 11 (11), 837, 2015
682015
Combining specificity determining and conserved residues improves functional site prediction
OV Kalinina, MS Gelfand, RB Russell
BMC bioinformatics 10, 1-24, 2009
502009
StructMAn: annotation of single-nucleotide polymorphisms in the structural context
A Gress, V Ramensky, J Büch, A Keller, OV Kalinina
Nucleic acids research 44 (W1), W463-W468, 2016
412016
Enthalpy–Entropy Compensation upon Molecular Conformational Changes
M Ahmad, V Helms, T Lengauer, OV Kalinina
Journal of Chemical Theory and Computation 11 (4), 1410-1418, 2015
362015
Modelling binding between CCR5 and CXCR4 receptors and their ligands suggests the surface electrostatic potential of the co-receptor to be a key player in the HIV-1 tropism
OV Kalinina, N Pfeifer, T Lengauer
Retrovirology 10 (1), 130, 2013
362013
Combinations of protein-chemical complex structures reveal new targets for established drugs
OV Kalinina, O Wichmann, G Apic, RB Russell
PLOS computational biology 7 (5), e1002043, 2011
362011
Targeting actin inhibits repair of doxorubicin-induced DNA damage: a novel therapeutic approach for combination therapy
L Pfitzer, C Moser, F Gegenfurtner, A Arner, F Foerster, C Atzberger, ...
Cell death & disease 10 (4), 302, 2019
342019
DIGGER: exploring the functional role of alternative splicing in protein interactions
Z Louadi, K Yuan, A Gress, O Tsoy, OV Kalinina, J Baumbach, ...
Nucleic Acids Research, 2020
312020
Artificial intelligence for natural product drug discovery
MW Mullowney, KR Duncan, SS Elsayed, N Garg, JJJ van der Hooft, ...
Nature Reviews Drug Discovery 22 (11), 895-916, 2023
282023
Consistent prediction of mutation effect on drug binding in HIV-1 protease using alchemical calculations
T Bastys, V Gapsys, NT Doncheva, R Kaiser, BL de Groot, OV Kalinina
Journal of chemical theory and computation 14 (7), 3397-3408, 2018
242018
Spatial distribution of disease-associated variants in three-dimensional structures of protein complexes
A Gress, V Ramensky, OV Kalinina
Oncogenesis 6 (9), e380-e380, 2017
232017
Sequence and Structure Analysis of Distantly-Related Viruses Reveals Extensive Gene Transfer between Viruses and Hosts and among Viruses
S Caprari, S Metzler, T Lengauer, OV Kalinina
Viruses 7 (10), 5388-5409, 2015
222015
Detection of atypical genes in virus families using a one-class SVM
S Metzler, OV Kalinina
BMC genomics 15, 1-12, 2014
212014
The bottromycin epimerase BotH defines a group of atypical α/β-hydrolase-fold enzymes
A Sikandar, L Franz, S Adam, J Santos-Aberturas, L Horbal, A Luzhetskyy, ...
Nature chemical biology 16 (9), 1013-1018, 2020
202020
Adenosine‐to‐Inosine RNA Editing in Mouse and Human Brain Proteomes
LI Levitsky, AA Kliuchnikova, KG Kuznetsova, DS Karpov, MV Ivanov, ...
Proteomics 19 (23), 1900195, 2019
192019
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