Richard J Edwards
Richard J Edwards
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ELM—the database of eukaryotic linear motifs
H Dinkel, S Michael, RJ Weatheritt, NE Davey, K Van Roey, B Altenberg, ...
Nucleic acids research 40 (D1), D242-D251, 2012
SLiMFinder: a probabilistic method for identifying over-represented, convergently evolved, short linear motifs in proteins
RJ Edwards, NE Davey, DC Shields
PloS one 2 (10), e967, 2007
Biochar alters the soil microbiome and soil function: results of next‐generation amplicon sequencing across Europe
JR Jenkins, M Viger, EC Arnold, ZM Harris, M Ventura, F Miglietta, ...
Gcb Bioenergy 9 (3), 591-612, 2017
SLiMDisc: short, linear motif discovery, correcting for common evolutionary descent
NE Davey, DC Shields, RJ Edwards
Nucleic acids research 34 (12), 3546-3554, 2006
SLiMPrints: conservation-based discovery of functional motif fingerprints in intrinsically disordered protein regions
NE Davey, JL Cowan, DC Shields, TJ Gibson, MJ Coldwell, RJ Edwards
Nucleic acids research 40 (21), 10628-10641, 2012
Bioinformatic discovery of novel bioactive peptides
RJ Edwards, N Moran, M Devocelle, A Kiernan, G Meade, W Signac, ...
Nature chemical biology 3 (2), 108-112, 2007
SLiMSearch 2.0: biological context for short linear motifs in proteins
NE Davey, NJ Haslam, DC Shields, RJ Edwards
Nucleic acids research 39 (suppl_2), W56-W60, 2011
SLiMFinder: a web server to find novel, significantly over-represented, short protein motifs
NE Davey, NJ Haslam, DC Shields, RJ Edwards
Nucleic acids research 38 (suppl_2), W534-W539, 2010
Masking residues using context-specific evolutionary conservation significantly improves short linear motif discovery
NE Davey, DC Shields, RJ Edwards
Bioinformatics 25 (4), 443-450, 2009
Draft genome assembly of the invasive cane toad, Rhinella marina
RJ Edwards, DE Tuipulotu, TG Amos, D O'Meally, MF Richardson, ...
Gigascience 7 (9), giy095, 2018
Tandem repeat copy-number variation in protein-coding regions of human genes
CT O'Dushlaine, RJ Edwards, SD Park, DC Shields
Genome biology 6, 1-12, 2005
The SLiMDisc server: short, linear motif discovery in proteins
NE Davey, RJ Edwards, DC Shields
Nucleic acids research 35 (suppl_2), W455-W459, 2007
Fluorescent protein‐mediated colour polymorphism in reef corals: multicopy genes extend the adaptation/acclimatization potential to variable light environments
JR Gittins, C D'Angelo, F Oswald, RJ Edwards, J Wiedenmann
Molecular ecology 24 (2), 453-465, 2015
Responses of the Emiliania huxleyi proteome to ocean acidification
BM Jones, MD Iglesias-Rodriguez, PJ Skipp, RJ Edwards, MJ Greaves, ...
PloS one 8 (4), e61868, 2013
Monitoring modulators of platelet aggregation in a microtiter plate assay
N Moran, A Kiernan, E Dunne, RJ Edwards, DC Shields, D Kenny
Analytical biochemistry 357 (1), 77-84, 2006
Computational prediction of short linear motifs from protein sequences
RJ Edwards, N Palopoli
Computational Peptidology, 89-141, 2015
CompariMotif: quick and easy comparisons of sequence motifs
RJ Edwards, NE Davey, DC Shields
Bioinformatics 24 (10), 1307-1309, 2008
Quantitative Proteomics of the Infectious and Replicative Forms of Chlamydia trachomatis
PJS Skipp, C Hughes, T McKenna, R Edwards, J Langridge, NR Thomson, ...
PLoS One 11 (2), e0149011, 2016
GASP: gapped ancestral sequence prediction for proteins
RJ Edwards, DC Shields
BMC bioinformatics 5, 1-10, 2004
Correlation of probiotic Lactobacillus salivarius growth phase with its cell wall-associated proteome
P Kelly, PB Maguire, M Bennett, DJ Fitzgerald, RJ Edwards, B Thiede, ...
FEMS Microbiology Letters 252 (1), 153-159, 2005
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