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Kimmen Sjolander
Kimmen Sjolander
Professor of Bioengineering, University of California, Berkeley
Verified email at berkeley.edu - Homepage
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Cited by
Year
The sequence of the human genome
JC Venter, MD Adams, EW Myers, PW Li, RJ Mural, GG Sutton, HO Smith, ...
science 291 (5507), 1304-1351, 2001
200052001
Hidden Markov models in computational biology: Applications to protein modeling
A Krogh, M Brown, IS Mian, K Sjölander, D Haussler
Journal of molecular biology 235 (5), 1501-1531, 1994
27781994
The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions
T Kleffmann, D Russenberger, A von Zychlinski, W Christopher, ...
Current Biology 14 (5), 354-362, 2004
6912004
Stochastic context-free grammers for tRNA modeling
Y Sakakibara, M Brown, R Hughey, IS Mian, K Sjölander, RC Underwood, ...
Nucleic acids research 22 (23), 5112-5120, 1994
5591994
Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology
K Sjölander, K Karplus, M Brown, R Hughey, A Krogh, IS Mian, ...
Bioinformatics 12 (4), 327-345, 1996
4831996
From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants
E Magnani, K Sjölander, S Hake
The Plant Cell 16 (9), 2265-2277, 2004
3302004
ModBase, a database of annotated comparative protein structure models, and associated resources
U Pieper, BM Webb, DT Barkan, D Schneidman-Duhovny, A Schlessinger, ...
Nucleic acids research 39 (suppl_1), D465-D474, 2010
3202010
Phylogenomic analysis of the receptor-like proteins of rice and Arabidopsis
LK Fritz-Laylin, N Krishnamurthy, M Tör, KV Sjölander, JDG Jones
Plant physiology 138 (2), 611-623, 2005
2812005
Using Dirichlet mixture priors to derive hidden Markov models for protein families.
M Brown, R Hughey, A Krogh, IS Mian, K Sjölander, D Haussler
Ismb 1, 47-55, 1993
2811993
Phylogenomic inference of protein molecular function: advances and challenges
K Sjölander
Bioinformatics 20 (2), 170-179, 2004
2672004
Standardized benchmarking in the quest for orthologs
AM Altenhoff, B Boeckmann, S Capella-Gutierrez, DA Dalquen, T DeLuca, ...
Nature methods 13 (5), 425-430, 2016
2292016
Predicting protein structure using hidden Markov models
K Karplus, K Sjölander, C Barrett, M Cline, D Haussler, R Hughey, L Holm, ...
Proteins: Structure, Function, and Bioinformatics 29 (S1), 134-139, 1997
2291997
Functional Analysis of Avr9/Cf-9 Rapidly Elicited Genes Identifies a Protein Kinase, ACIK1, That Is Essential for Full Cf-9–Dependent Disease Resistance in Tomato
O Rowland, AA Ludwig, CJ Merrick, F Baillieul, FE Tracy, WE Durrant, ...
The Plant Cell 17 (1), 295-310, 2005
2252005
The interface of protein structure, protein biophysics, and molecular evolution
DA Liberles, SA Teichmann, I Bahar, U Bastolla, J Bloom, ...
Protein Science 21 (6), 769-785, 2012
2202012
Molecular characterization of proteolytic cleavage sites of the Pseudomonas syringae effector AvrRpt2
ST Chisholm, D Dahlbeck, N Krishnamurthy, B Day, K Sjolander, ...
Proceedings of the National Academy of Sciences 102 (6), 2087-2092, 2005
1992005
Protein modeling using hidden Markov models: Analysis of globins
D Haussler, A Krogh, IS Mian, K Sjolander
[1993] Proceedings of the Twenty-sixth Hawaii International Conference on …, 1993
1761993
A comparison of scoring functions for protein sequence profile alignment
RC Edgar, K Sjölander
Bioinformatics 20 (8), 1301-1308, 2004
1492004
Automated protein subfamily identification and classification
DP Brown, N Krishnamurthy, K Sjölander
PLoS computational biology 3 (8), e160, 2007
1362007
Distribution and properties of the genes encoding the biosynthesis of the bacterial cofactor, pyrroloquinoline quinone
YQ Shen, F Bonnot, EM Imsand, JM RoseFigura, K Sjölander, ...
Biochemistry 51 (11), 2265-2275, 2012
1342012
Proteome Analysis of the Rice Etioplast: Metabolic and Regulatory Networks and Novel Protein Functions* S
A von Zychlinski, T Kleffmann, N Krishnamurthy, K Sjölander, S Baginsky, ...
Molecular & Cellular Proteomics 4 (8), 1072-1084, 2005
1292005
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