Prati
Ivan G. Costa
Ivan G. Costa
Professor, Institute of Computational Genomics, RWTH Aachen
Potvrđena adresa e-pošte na rwth-aachen.de - Početna stranica
Naslov
Citirano
Citirano
Godina
Clustering cancer gene expression data: a comparative study
MCP De Souto, IG Costa, DSA de Araujo, TB Ludermir, A Schliep
BMC bioinformatics 9, 1-14, 2008
5372008
SARS-CoV-2 infects and replicates in cells of the human endocrine and exocrine pancreas
JA Müller, R Groß, C Conzelmann, J Krüger, U Merle, J Steinhart, T Weil, ...
Nature metabolism 3 (2), 149-165, 2021
4902021
Therapeutic inhibition of inflammatory monocyte recruitment reduces steatohepatitis and liver fibrosis
O Krenkel, T Puengel, O Govaere, AT Abdallah, JC Mossanen, ...
Hepatology 67 (4), 1270-1283, 2018
4762018
Identification of transcription factor binding sites using ATAC-seq
Z Li, MH Schulz, T Look, M Begemann, M Zenke, IG Costa
Genome biology 20, 1-21, 2019
4032019
Spatial multi-omic map of human myocardial infarction
C Kuppe, RO Ramirez Flores, Z Li, S Hayat, RT Levinson, X Liao, ...
Nature 608 (7924), 766-777, 2022
2472022
Deep learning-based clustering approaches for bioinformatics
MR Karim, O Beyan, A Zappa, IG Costa, D Rebholz-Schuhmann, ...
Briefings in bioinformatics 22 (1), 393-415, 2021
2292021
A multiple kernel learning algorithm for drug-target interaction prediction
ACA Nascimento, RBC Prudêncio, IG Costa
BMC bioinformatics 17, 1-16, 2016
2282016
Human pluripotent stem cell-derived acinar/ductal organoids generate human pancreas upon orthotopic transplantation and allow disease modelling
M Hohwieler, A Illing, PC Hermann, T Mayer, M Stockmann, L Perkhofer, ...
Gut 66 (3), 473-486, 2017
2242017
Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data
D Dimitrov, D Türei, M Garrido-Rodriguez, PL Burmedi, JS Nagai, C Boys, ...
Nature communications 13 (1), 3224, 2022
219*2022
On the selection of appropriate distances for gene expression data clustering
PA Jaskowiak, RJGB Campello, IG Costa
BMC bioinformatics 15, 1-17, 2014
2062014
DNA methylation levels at individual age-associated CpG sites can be indicative for life expectancy
Q Lin, CI Weidner, IG Costa, RE Marioni, MRP Ferreira, IJ Deary, ...
Aging (Albany NY) 8 (2), 394, 2016
1872016
HMGB2 loss upon senescence entry disrupts genomic organization and induces CTCF clustering across cell types
A Zirkel, M Nikolic, K Sofiadis, JP Mallm, CA Brackley, H Gothe, ...
Molecular cell 70 (4), 730-744. e6, 2018
1862018
SARS-CoV-2 infects the human kidney and drives fibrosis in kidney organoids
J Jansen, KC Reimer, JS Nagai, FS Varghese, GJ Overheul, M de Beer, ...
Cell Stem Cell 29 (2), 217-231. e8, 2022
1812022
Myeloid cells in liver and bone marrow acquire a functionally distinct inflammatory phenotype during obesity-related steatohepatitis
O Krenkel, J Hundertmark, AT Abdallah, M Kohlhepp, T Puengel, T Roth, ...
Gut 69 (3), 551-563, 2020
1692020
Analysis of computational footprinting methods for DNase sequencing experiments
EG Gusmao, M Allhoff, M Zenke, IG Costa
Nature methods 13 (4), 303-309, 2016
1662016
The lncRNA HOTAIR impacts on mesenchymal stem cells via triple helix formation
M Kalwa, S Hänzelmann, S Otto, CC Kuo, J Franzen, S Joussen, ...
Nucleic acids research 44 (22), 10631-10643, 2016
1602016
Detection of RNA–DNA binding sites in long noncoding RNAs
CC Kuo, S Hänzelmann, N Sentürk Cetin, S Frank, B Zajzon, JP Derks, ...
Nucleic acids research 47 (6), e32-e32, 2019
1482019
Surface topography guides morphology and spatial patterning of induced pluripotent stem cell colonies
G Abagnale, A Sechi, M Steger, Q Zhou, CC Kuo, G Aydin, C Schalla, ...
Stem cell reports 9 (2), 654-666, 2017
1442017
Impact of missing data imputation methods on gene expression clustering and classification
MCP De Souto, PA Jaskowiak, IG Costa
BMC bioinformatics 16, 1-9, 2015
1362015
Epigenetic age predictions based on buccal swabs are more precise in combination with cell type-specific DNA methylation signatures
M Eipel, F Mayer, T Arent, MRP Ferreira, C Birkhofer, U Gerstenmaier, ...
Aging (Albany NY) 8 (5), 1034, 2016
1282016
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