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Ying Li, Ph.D
Ying Li, Ph.D
Principal Bioinformatician, Mayo Clinic
Verified email at mayo.edu
Title
Cited by
Cited by
Year
The Selaginella genome identifies genetic changes associated with the evolution of vascular plants
JA Banks, T Nishiyama, M Hasebe, JL Bowman, M Gribskov, ...
science 332 (6032), 960-963, 2011
8802011
Measure transcript integrity using RNA-seq data
L Wang, J Nie, H Sicotte, Y Li, JE Eckel-Passow, S Dasari, PT Vedell, ...
BMC bioinformatics 17, 1-16, 2016
2142016
Targeting tumor-associated macrophages and granulocytic myeloid-derived suppressor cells augments PD-1 blockade in cholangiocarcinoma
E Loeuillard, J Yang, ELN Buckarma, J Wang, Y Liu, C Conboy, ...
The Journal of clinical investigation 130 (10), 5380-5396, 2020
2032020
APOBEC3B upregulation and genomic mutation patterns in serous ovarian carcinoma
B Leonard, SN Hart, MB Burns, MA Carpenter, NA Temiz, A Rathore, ...
Cancer research 73 (24), 7222-7231, 2013
1812013
A rice kinase-protein interaction map
X Ding, T Richter, M Chen, H Fujii, YS Seo, M Xie, X Zheng, S Kanrar, ...
Plant physiology 149 (3), 1478-1492, 2009
1432009
Fluorescence microscopy for visualization of soil microorganisms—a review
Y Li, WA Dick, OH Tuovinen
Biology and fertility of soils 39, 301-311, 2004
1282004
CX3CR1 identifies PD-1 therapy–responsive CD8+ T cells that withstand chemotherapy during cancer chemoimmunotherapy
Y Yan, S Cao, X Liu, SM Harrington, WE Bindeman, AA Adjei, JS Jang, ...
JCI insight 3 (8), 2018
1092018
Immune signatures underlying post-acute COVID-19 lung sequelae
IS Cheon, C Li, YM Son, NP Goplen, Y Wu, T Cassmann, Z Wang, X Wei, ...
Science Immunology 6 (65), eabk1741, 2021
1082021
Development and characterization of human-induced pluripotent stem cell-derived cholangiocytes
TM De Assuncao, Y Sun, N Jalan-Sakrikar, MC Drinane, BQ Huang, Y Li, ...
Laboratory investigation 95 (6), 684-696, 2015
952015
Tissue-resident CD8+ T cells drive age-associated chronic lung sequelae after viral pneumonia
NP Goplen, Y Wu, YM Son, C Li, Z Wang, IS Cheon, L Jiang, B Zhu, ...
Science immunology 5 (53), eabc4557, 2020
912020
Histone deacetylase inhibition promotes osteoblast maturation by altering the histone H4 epigenome and reduces Akt phosphorylation
A Dudakovic, JM Evans, Y Li, S Middha, ME McGee-Lawrence, ...
Journal of Biological Chemistry 288 (40), 28783-28791, 2013
892013
Molecular signatures of multiple myeloma progression through single cell RNA-Seq
JS Jang, Y Li, AK Mitra, L Bi, A Abyzov, AJ van Wijnen, LB Baughn, ...
Blood cancer journal 9 (1), 2, 2019
792019
Activation of TAK1 by MYD88 L265P drives malignant B-cell Growth in non-Hodgkin lymphoma
SM Ansell, LS Hodge, FJ Secreto, M Manske, E Braggio, T Price-Troska, ...
Blood cancer journal 4 (2), e183-e183, 2014
782014
TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data
YW Asmann, S Middha, A Hossain, S Baheti, Y Li, HS Chai, Z Sun, ...
Bioinformatics 28 (2), 277-278, 2012
752012
A prospective genome-wide study of prostate cancer metastases reveals association of wnt pathway activation and increased cell cycle proliferation with primary resistance to …
L Wang, SM Dehm, DW Hillman, H Sicotte, W Tan, M Gormley, ...
Annals of Oncology 29 (2), 352-360, 2018
742018
Single-cell analysis of targeted transcriptome predicts drug sensitivity of single cells within human myeloma tumors
AK Mitra, UK Mukherjee, T Harding, JS Jang, H Stessman, Y Li, A Abyzov, ...
Leukemia 30 (5), 1094-1102, 2016
692016
HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data
H Yan, J Evans, M Kalmbach, R Moore, S Middha, S Luban, L Wang, ...
BMC bioinformatics 15, 1-12, 2014
662014
ST3GAL1 is a target of the SOX2-GLI1 transcriptional complex and promotes melanoma metastasis through AXL
S Pietrobono, G Anichini, C Sala, F Manetti, LL Almada, S Pepe, RM Carr, ...
Nature communications 11 (1), 5865, 2020
572020
ERβ-mediated induction of cystatins results in suppression of TGFβ signaling and inhibition of triple-negative breast cancer metastasis
JM Reese, ES Bruinsma, AW Nelson, I Chernukhin, JS Carroll, Y Li, ...
Proceedings of the National Academy of Sciences 115 (41), E9580-E9589, 2018
572018
DPAGT1 myasthenia and myopathy: genetic, phenotypic, and expression studies
D Selcen, XM Shen, J Brengman, Y Li, AA Stans, E Wieben, AG Engel
Neurology 82 (20), 1822-1830, 2014
562014
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