| The multiscale coarse-graining method. I. A rigorous bridge between atomistic and coarse-grained models WG Noid, JW Chu, GS Ayton, V Krishna, S Izvekov, GA Voth, A Das, ... The Journal of chemical physics 128 (24), 2008 | 922 | 2008 |
| A systematic methodology for defining coarse-grained sites in large biomolecules Z Zhang, L Lu, WG Noid, V Krishna, J Pfaendtner, GA Voth Biophysical journal 95 (11), 5073-5083, 2008 | 181 | 2008 |
| Comprehensive epigenetic landscape of rheumatoid arthritis fibroblast-like synoviocytes R Ai, T Laragione, D Hammaker, DL Boyle, A Wildberg, K Maeshima, ... Nature communications 9 (1), 1921, 2018 | 159 | 2018 |
| The multiscale coarse-graining method. IV. Transferring coarse-grained potentials between temperatures V Krishna, WG Noid, GA Voth The Journal of chemical physics 131 (2), 2009 | 132 | 2009 |
| Vibrational lifetimes of molecular adsorbates on metal surfaces V Krishna, JC Tully The Journal of chemical physics 125 (5), 2006 | 124 | 2006 |
| The context-dependence of mutations: a linkage of formalisms FJ Poelwijk, V Krishna, R Ranganathan PLoS computational biology 12 (6), e1004771, 2016 | 106 | 2016 |
| Gene signatures of tumor inflammation and epithelial-to-mesenchymal transition (EMT) predict responses to immune checkpoint blockade in lung cancer with high accuracy JC Thompson, WT Hwang, C Davis, C Deshpande, S Jeffries, ... Lung cancer 139, 1-8, 2020 | 96 | 2020 |
| New insights into BAR domain-induced membrane remodeling GS Ayton, E Lyman, V Krishna, RD Swenson, C Mim, VM Unger, GA Voth Biophysical journal 97 (6), 1616-1625, 2009 | 93 | 2009 |
| Rheumatoid arthritis CD14+ monocytes display metabolic and inflammatory dysfunction, a phenotype that precedes clinical manifestation of disease T McGarry, MM Hanlon, V Marzaioli, CC Cunningham, V Krishna, ... Clinical & translational immunology 10 (1), e1237, 2021 | 50 | 2021 |
| Pathogenic, glycolytic PD-1+ B cells accumulate in the hypoxic RA joint A Floudas, N Neto, V Marzaioli, K Murray, B Moran, MG Monaghan, ... JCI insight 5 (21), 2020 | 50 | 2020 |
| Role of protein interactions in defining HIV-1 viral capsid shape and stability: a coarse-grained analysis V Krishna, GS Ayton, GA Voth Biophysical journal 98 (1), 18-26, 2010 | 41 | 2010 |
| Integration of the transcriptome and genome-wide landscape of BRD2 and BRD4 binding motifs identifies key superenhancer genes and reveals the mechanism of bet inhibitor action … V Krishna, X Yin, Q Song, A Walsh, D Pocalyko, K Bachman, I Anderson, ... The Journal of Immunology 206 (2), 422-431, 2021 | 26 | 2021 |
| Distinct stromal and immune cell interactions shape the pathogenesis of rheumatoid and psoriatic arthritis A Floudas, CM Smith, O Tynan, N Neto, V Krishna, SM Wade, M Hanlon, ... Annals of the Rheumatic Diseases 81 (9), 1224-1242, 2022 | 24 | 2022 |
| Loss of balance between protective and pro-inflammatory synovial tissue T-cell polyfunctionality predates clinical onset of rheumatoid arthritis A Floudas, N Neto, C Orr, M Canavan, P Gallagher, C Hurson, ... Annals of the rheumatic diseases 81 (2), 193-205, 2022 | 24 | 2022 |
| Path integral formulation for quantum nonadiabatic dynamics and the mixed quantum classical limit V Krishna The Journal of chemical physics 126 (13), 2007 | 23 | 2007 |
| Identification of LTBP-2 as a plasma biomarker for right ventricular dysfunction in human pulmonary arterial hypertension O Boucherat, T Yokokawa, V Krishna, S Kalyana-Sundaram, S Martineau, ... Nature cardiovascular research 1 (8), 748-760, 2022 | 16 | 2022 |
| A generalized mean field theory of coarse-graining V Krishna, L Larini The Journal of chemical physics 135 (12), 2011 | 16 | 2011 |
| Time-dependent density-functional theory for nonadiabatic electronic dynamics V Krishna Physical review letters 102 (5), 053002, 2009 | 12 | 2009 |
| Implication of EZH2 in the pro-proliferative and apoptosis-resistant phenotype of pulmonary artery smooth muscle cells in PAH: a transcriptomic and proteomic approach K Habbout, J Omura, C Awada, A Bourgeois, Y Grobs, V Krishna, ... International journal of molecular sciences 22 (6), 2957, 2021 | 10 | 2021 |
| Evaluation of nonlinear quantum time correlation functions within the centroid dynamics formulation V Krishna, GA Voth The Journal of Physical Chemistry B 110 (38), 18953-18957, 2006 | 9 | 2006 |
