| Clinical information extraction applications: a literature review Y Wang, L Wang, M Rastegar-Mojarad, S Moon, F Shen, N Afzal, S Liu, ... Journal of biomedical informatics 77, 34-49, 2018 | 498 | 2018 |
| A comparison of word embeddings for the biomedical natural language processing Y Wang, S Liu, N Afzal, M Rastegar-Mojarad, L Wang, F Shen, ... Journal of biomedical informatics 87, 12-20, 2018 | 290 | 2018 |
| Deep learning and alternative learning strategies for retrospective real-world clinical data D Chen, S Liu, P Kingsbury, S Sohn, CB Storlie, EB Habermann, ... npj Digital Medicine 2 (1), 43, 2019 | 125 | 2019 |
| A clinical text classification paradigm using weak supervision and deep representation Y Wang, S Sohn, S Liu, F Shen, L Wang, EJ Atkinson, S Amin, H Liu BMC medical informatics and decision making 19 (1), 1-13, 2019 | 107 | 2019 |
| Clinical Concept Extraction: a Methodology Review S Fu, D Chen, H He, S Liu, S Moon, KJ Peterson, F Shen, L Wang, ... Journal of Biomedical Informatics, 103526, 2020 | 50 | 2020 |
| Desiderata for delivering NLP to accelerate healthcare AI advancement and a Mayo Clinic NLP-as-a-service implementation A Wen, S Fu, S Moon, M El Wazir, A Rosenbaum, VC Kaggal, S Liu, ... npj Digital Medicine 2 (1), 1-7, 2019 | 40 | 2019 |
| Integrating Structured and Unstructured EHR Data Using an FHIR-based Type System: A Case Study with Medication Data N Hong, A Wen, F Shen, S Sohn, S Liu, H Liu, G Jiang AMIA Summits on Translational Science Proceedings 2018, 74, 2018 | 38 | 2018 |
| Dependency and AMR Embeddings for Drug-Drug Interaction Extraction from Biomedical Literature Y Wang, S Liu, M Rastegar-Mojarad, L Wang, F Shen, F Liu, H Liu Proceedings of the 8th ACM International Conference on Bioinformatics …, 2017 | 38 | 2017 |
| Overview of the BioCreative/OHNLP Challenge 2018 Task 2: Clinical Semantic Textual Similarity Y Wang, N Afzal, S Liu, M Rastegar-Mojarad, L Wang, F Shen, S Fu, H Liu Proceedings of the BioCreative/OHNLP Challenge 2018, 2018 | 29 | 2018 |
| Modeling asynchronous event sequences with RNNs S Wu, S Liu, S Sohn, S Moon, C Wi, Y Juhn, H Liu Journal of biomedical informatics 83, 167-177, 2018 | 28 | 2018 |
| Extracting chemical–protein relations using attention-based neural networks S Liu, F Shen, R Komandur Elayavilli, Y Wang, M Rastegar-Mojarad, ... Database 2018, bay102, 2018 | 27 | 2018 |
| Leveraging collaborative filtering to accelerate rare disease diagnosis F Shen, S Liu, Y Wang, L Wang, N Afzal, H Liu AMIA Annual Symposium Proceedings 2017, 1554, 2017 | 25 | 2017 |
| Automated extraction of sudden cardiac death risk factors in hypertrophic cardiomyopathy patients by natural language processing S Moon, S Liu, CG Scott, S Samudrala, MM Abidian, JB Geske, ... International journal of medical informatics 128, 32-38, 2019 | 24 | 2019 |
| Utilization of electronic medical records and biomedical literature to support the diagnosis of rare diseases using data fusion and collaborative filtering approaches F Shen, S Liu, Y Wang, A Wen, L Wang, H Liu JMIR medical informatics 6 (4), e11301, 2018 | 24 | 2018 |
| HPO2Vec+: leveraging heterogeneous knowledge resources to enrich node embeddings for the human phenotype ontology F Shen, S Peng, Y Fan, A Wen, S Liu, Y Wang, L Wang, H Liu Journal of biomedical informatics 96, 103246, 2019 | 23 | 2019 |
| Rare disease knowledge enrichment through a data-driven approach F Shen, Y Zhao, L Wang, MR Mojarad, Y Wang, S Liu, H Liu BMC medical informatics and decision making 19 (1), 1-11, 2019 | 22 | 2019 |
| Attention-based Neural Networks for Chemical Protein Relation Extraction S Liu, F Shen, Y Wang, M Rastegar-Mojarad, RK Elayavilli, V Chaudhary, ... BioCreative VI Workshop Proceedings, 2017 | 19 | 2017 |
| Systematic identification of latent disease-gene associations from PubMed articles Y Zhang, F Shen, MR Mojarad, D Li, S Liu, C Tao, Y Yu, H Liu PloS one 13 (1), e0191568, 2018 | 18 | 2018 |
| Systematic Analysis of Free-Text Family History in Electronic Health Record Y Wang, L Wang, M Rastegar-Mojarad, S Liu, F Shen, H Liu AMIA Joint Summits on Clinical Research Informatics 11, 12, 2017 | 18 | 2017 |
| Time event ontology (TEO): to support semantic representation and reasoning of complex temporal relations of clinical events F Li, J Du, Y He, HY Song, M Madkour, G Rao, Y Xiang, Y Luo, HW Chen, ... Journal of the American Medical Informatics Association 27 (7), 1046-1056, 2020 | 16 | 2020 |
Hongfang LiuProfessor of Biomedical Informatics, Mayo ClinicVerified email at mayo.edu
