Alejandra Medina-Rivera
Alejandra Medina-Rivera
Laboratorio Internacional de Investigación sobre el Genoma Humano, Universidad Nacional Autónoma de
Verified email at - Homepage
Cited by
Cited by
RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond
S Gama-Castro, H Salgado, A Santos-Zavaleta, D Ledezma-Tejeida, ...
Nucleic acids research 44 (D1), D133-D143, 2016
RegulonDB v8. 0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more
H Salgado, M Peralta-Gil, S Gama-Castro, A Santos-Zavaleta, ...
Nucleic acids research 41 (D1), D203-D213, 2013
RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)
S Gama-Castro, H Salgado, M Peralta-Gil, A Santos-Zavaleta, ...
Nucleic acids research 39 (suppl_1), D98-D105, 2010
RSAT 2011: regulatory sequence analysis tools
M Thomas-Chollier, M Defrance, A Medina-Rivera, O Sand, C Herrmann, ...
Nucleic acids research 39 (suppl_2), W86-W91, 2011
RSAT 2015: regulatory sequence analysis tools
A Medina-Rivera, M Defrance, O Sand, C Herrmann, ...
Nucleic acids research 43 (W1), W50-W56, 2015
Genome-wide characterization of mammalian promoters with distal enhancer functions
LTM Dao, AO Galindo-Albarrán, JA Castro-Mondragon, C Andrieu-Soler, ...
Nature genetics 49 (7), 1073-1081, 2017
Topoisomerase II beta interacts with cohesin and CTCF at topological domain borders
L Uusküla-Reimand, H Hou, P Samavarchi-Tehrani, MV Rudan, M Liang, ...
Genome biology 17, 1-22, 2016
RSAT 2018: regulatory sequence analysis tools 20th anniversary
NTT Nguyen, B Contreras-Moreira, JA Castro-Mondragon, ...
Nucleic acids research 46 (W1), W209-W214, 2018
Multi-species, multi-transcription factor binding highlights conserved control of tissue-specific biological pathways
B Ballester, A Medina-Rivera, D Schmidt, M Gonzàlez-Porta, M Carlucci, ...
Elife 3, e02626, 2014
Dynamic regulation of VEGF-inducible genes by an ERK/ERG/p300 transcriptional network
JE Fish, M Cantu Gutierrez, LT Dang, N Khyzha, Z Chen, S Veitch, ...
Development 144 (13), 2428-2444, 2017
MACE: model based analysis of ChIP-exo
L Wang, J Chen, C Wang, L Uusküla-Reimand, K Chen, A Medina-Rivera, ...
Nucleic acids research 42 (20), e156-e156, 2014
Theoretical and empirical quality assessment of transcription factor-binding motifs
A Medina-Rivera, C Abreu-Goodger, M Thomas-Chollier, H Salgado, ...
Nucleic acids research 39 (3), 808-824, 2011
Widespread enhancer activity from core promoters
A Medina-Rivera, D Santiago-Algarra, D Puthier, S Spicuglia
Trends in biochemical sciences 43 (6), 452-468, 2018
In Silico Identification and Experimental Characterization of Regulatory Elements Controlling the Expression of the Salmonella csrB and csrC Genes
LC Martínez, I Martínez-Flores, H Salgado, M Fernández-Mora, ...
Journal of bacteriology 196 (2), 325-336, 2014
RegulonDB version 7.0: transcriptional regulation of
S Gama-Castro, H Salgado, M Peralta-Gil, A Santos-Zavaleta, ...
Escherichia coli, 98-105, 0
Bioinformatics resources for the study of gene regulation in bacteria
J Collado-Vides, H Salgado, E Morett, S Gama-Castro, V Jiménez-Jacinto, ...
Journal of bacteriology 191 (1), 23-31, 2009
Evidence classification of high-throughput protocols and confidence integration in RegulonDB
V Weiss, A Medina-Rivera, AM Huerta, A Santos-Zavaleta, H Salgado, ...
Database 2013, 2013
Structural and functional map of a bacterial nucleoid
A Martínez-Antonio, A Medina-Rivera, J Collado-Vides
Genome biology 10, 1-4, 2009
PulmonDB: a curated lung disease gene expression database
AB Villaseñor-Altamirano, M Moretto, M Maldonado, A Zayas-Del Moral, ...
Scientific reports 10 (1), 514, 2020
Epromoters function as a hub to recruit key transcription factors required for the inflammatory response
D Santiago-Algarra, C Souaid, H Singh, LTM Dao, S Hussain, ...
Nature communications 12 (1), 6660, 2021
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