Alejandra Medina-Rivera

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THOMAS-CHOLLIER Morganeassociate professor, Ecole Normale Supérieure ParisVerified email at biologie.ens.fr
Denis ThieffryProfessor of Systems Biology, Institut de Biologie de l'Ecole Normale Supérieure (IBENS), ParisVerified email at ens.fr
Jacques van HeldenAix-Marseille UniversitéVerified email at univ-amu.fr
Julio Collado-VidesProfessor of Computational Genomics, CCG, UNAMVerified email at ccg.unam.mx
Jaime A Castro-MondragonCentre for Molecular Medicine Norway (NCMM)Verified email at ncmm.uio.no
Michael D. WilsonUniversity of Toronto and SickKids Research InstituteVerified email at sickkids.ca
Bruno Contreras-MoreiraSpanish National Research Council, Estación Experimental de Aula DeiVerified email at eead.csic.es
Alberto Santos-ZavaletaScientific Database CuratorVerified email at ccg.unam.mx
Irma Martínez-FloresCCG-UNAM Programa de Genómica EvolutivaVerified email at ccg.unam.mx
Luis José Muñiz RascadoCCG/UNAMVerified email at ccg.unam.mx
Carl HerrmannLecturer - Health Data Science Unit - BioQuant and Medical Faculty HeidelbergVerified email at uni-heidelberg.de
Matthieu DefranceAssociate Professor, Université Libre de BruxellesVerified email at ulb.be
Kevin Alquicira HernándezTécnico Académico Titular A. Instituto de Energías Renovables UNAM.Verified email at ier.unam.mx
Matthew T. WeirauchProfessor, Cincinnati Children's HospitalVerified email at cchmc.org
Céline HernandezI2BC / CNRSVerified email at i2bc.paris-saclay.fr
Enrique MorettInstituto de Biotecnologia, Universidad Nacional Autonoma de Mexico, UNAM.Verified email at ibt.unam.mx
Duncan T OdomUniversity of Heidelberg & German Cancer Research Center/DKFZVerified email at dkfz-heidelberg.de
Mar Gonzàlez-PortaIllumina Inc.Verified email at illumina.com
Benoit BallesterINSERM - National Institute of Health and Medical ResearchVerified email at inserm.fr
Veronica JimenezInstituto de Biotecnología UNAMVerified email at ibt.unam.mx

Alejandra Medina-Rivera

Laboratorio Internacional de Investigación sobre el Genoma Humano, Universidad Nacional Autónoma de

Verified email at liigh.unam.mx - Homepage

Bioinformatics Genomics


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RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond S Gama-Castro, H Salgado, A Santos-Zavaleta, D Ledezma-Tejeida, ... Nucleic acids research 44 (D1), D133-D143, 2016	509	2016
RegulonDB v8. 0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more H Salgado, M Peralta-Gil, S Gama-Castro, A Santos-Zavaleta, ... Nucleic acids research 41 (D1), D203-D213, 2013	505	2013
RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units) S Gama-Castro, H Salgado, M Peralta-Gil, A Santos-Zavaleta, ... Nucleic acids research 39 (suppl_1), D98-D105, 2010	459	2010
RSAT 2011: regulatory sequence analysis tools M Thomas-Chollier, M Defrance, A Medina-Rivera, O Sand, C Herrmann, ... Nucleic acids research 39 (suppl_2), W86-W91, 2011	290	2011
RSAT 2015: regulatory sequence analysis tools A Medina-Rivera, M Defrance, O Sand, C Herrmann, ... Nucleic acids research 43 (W1), W50-W56, 2015	268	2015
Genome-wide characterization of mammalian promoters with distal enhancer functions LTM Dao, AO Galindo-Albarrán, JA Castro-Mondragon, C Andrieu-Soler, ... Nature genetics 49 (7), 1073-1081, 2017	239	2017
Topoisomerase II beta interacts with cohesin and CTCF at topological domain borders L Uusküla-Reimand, H Hou, P Samavarchi-Tehrani, MV Rudan, M Liang, ... Genome biology 17, 1-22, 2016	219	2016
RSAT 2018: regulatory sequence analysis tools 20th anniversary NTT Nguyen, B Contreras-Moreira, JA Castro-Mondragon, ... Nucleic acids research 46 (W1), W209-W214, 2018	182	2018
Multi-species, multi-transcription factor binding highlights conserved control of tissue-specific biological pathways B Ballester, A Medina-Rivera, D Schmidt, M Gonzàlez-Porta, M Carlucci, ... Elife 3, e02626, 2014	105	2014
Dynamic regulation of VEGF-inducible genes by an ERK/ERG/p300 transcriptional network JE Fish, M Cantu Gutierrez, LT Dang, N Khyzha, Z Chen, S Veitch, ... Development 144 (13), 2428-2444, 2017	90	2017
MACE: model based analysis of ChIP-exo L Wang, J Chen, C Wang, L Uusküla-Reimand, K Chen, A Medina-Rivera, ... Nucleic acids research 42 (20), e156-e156, 2014	85	2014
Theoretical and empirical quality assessment of transcription factor-binding motifs A Medina-Rivera, C Abreu-Goodger, M Thomas-Chollier, H Salgado, ... Nucleic acids research 39 (3), 808-824, 2011	76	2011
Widespread enhancer activity from core promoters A Medina-Rivera, D Santiago-Algarra, D Puthier, S Spicuglia Trends in biochemical sciences 43 (6), 452-468, 2018	55	2018
In Silico Identification and Experimental Characterization of Regulatory Elements Controlling the Expression of the Salmonella csrB and csrC Genes LC Martínez, I Martínez-Flores, H Salgado, M Fernández-Mora, ... Journal of bacteriology 196 (2), 325-336, 2014	41	2014
RegulonDB version 7.0: transcriptional regulation of S Gama-Castro, H Salgado, M Peralta-Gil, A Santos-Zavaleta, ... Escherichia coli, 98-105, 0	38
Bioinformatics resources for the study of gene regulation in bacteria J Collado-Vides, H Salgado, E Morett, S Gama-Castro, V Jiménez-Jacinto, ... Journal of bacteriology 191 (1), 23-31, 2009	37	2009
Evidence classification of high-throughput protocols and confidence integration in RegulonDB V Weiss, A Medina-Rivera, AM Huerta, A Santos-Zavaleta, H Salgado, ... Database 2013, 2013	25	2013
Structural and functional map of a bacterial nucleoid A Martínez-Antonio, A Medina-Rivera, J Collado-Vides Genome biology 10, 1-4, 2009	22	2009
PulmonDB: a curated lung disease gene expression database AB Villaseñor-Altamirano, M Moretto, M Maldonado, A Zayas-Del Moral, ... Scientific reports 10 (1), 514, 2020	18	2020
Epromoters function as a hub to recruit key transcription factors required for the inflammatory response D Santiago-Algarra, C Souaid, H Singh, LTM Dao, S Hussain, ... Nature communications 12 (1), 6660, 2021	16	2021

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