| The BioPAX community standard for pathway data sharing E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ... Nature biotechnology 28 (9), 935-942, 2010 | 764 | 2010 |
| RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation S Gama-Castro, V Jiménez-Jacinto, M Peralta-Gil, A Santos-Zavaleta, ... Nucleic acids research 36 (suppl_1), D120-D124, 2008 | 615 | 2008 |
| RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond S Gama-Castro, H Salgado, A Santos-Zavaleta, D Ledezma-Tejeida, ... Nucleic acids research 44 (D1), D133-D143, 2016 | 511 | 2016 |
| RegulonDB v8. 0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more H Salgado, M Peralta-Gil, S Gama-Castro, A Santos-Zavaleta, ... Nucleic acids research 41 (D1), D203-D213, 2013 | 507 | 2013 |
| RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions H Salgado, S Gama-Castro, M Peralta-Gil, E Diaz-Peredo, ... Nucleic acids research 34 (suppl_1), D394-D397, 2006 | 469 | 2006 |
| RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units) S Gama-Castro, H Salgado, M Peralta-Gil, A Santos-Zavaleta, ... Nucleic acids research 39 (suppl_1), D98-D105, 2010 | 460 | 2010 |
| Analysis of the Frz signal transduction system of Myxococcus xanthus shows the importance of the conserved C‐terminal region of the cytoplasmic chemoreceptor … VH Bustamante, I Martínez‐Flores, HC Vlamakis, DR Zusman Molecular microbiology 53 (5), 1501-1513, 2004 | 131 | 2004 |
| Automatic reconstruction of a bacterial regulatory network using Natural Language Processing C Rodríguez-Penagos, H Salgado, I Martínez-Flores, J Collado-Vides BMC bioinformatics 8 (1), 1-11, 2007 | 59 | 2007 |
| The transcriptional regulator SsrB is involved in a molecular switch controlling virulence lifestyles of Salmonella D Pérez-Morales, MM Banda, NYE Chau, H Salgado, I Martínez-Flores, ... PLoS pathogens 13 (7), e1006497, 2017 | 57 | 2017 |
| The ompB Operon Partially Determines Differential Expression of OmpC in Salmonella typhi andEscherichia coli I Martínez-Flores, R Cano, VH Bustamante, E Calva, JL Puente Journal of Bacteriology 181 (2), 556-562, 1999 | 57 | 1999 |
| In Silico Identification and Experimental Characterization of Regulatory Elements Controlling the Expression of the Salmonella csrB and csrC Genes LC Martínez, I Martínez-Flores, H Salgado, M Fernández-Mora, ... Journal of bacteriology 196 (2), 325-336, 2014 | 41 | 2014 |
| RegulonDB version 7.0: transcriptional regulation of S Gama-Castro, H Salgado, M Peralta-Gil, A Santos-Zavaleta, ... Escherichia coli, 98-105, 0 | 38 | |
| Bioinformatics resources for the study of gene regulation in bacteria J Collado-Vides, H Salgado, E Morett, S Gama-Castro, V Jiménez-Jacinto, ... Journal of bacteriology 191 (1), 23-31, 2009 | 37 | 2009 |
| Anti-sigma factors in E. coli: common regulatory mechanisms controlling sigma factors availability L Gerardo Trevino-Quintanilla, J Augusto Freyre-Gonzalez, ... Current genomics 14 (6), 378-387, 2013 | 33 | 2013 |
| Phylogenomic Rhizobium Species Are Structured by a Continuum of Diversity and Genomic Clusters V González, RI Santamaría, P Bustos, OM Pérez-Carrascal, P Vinuesa, ... Frontiers in Microbiology 10, 910, 2019 | 25 | 2019 |
| In silico clustering of Salmonella global gene expression data reveals novel genes co-regulated with the SPI-1 virulence genes through HilD I Martínez-Flores, D Pérez-Morales, M Sánchez-Pérez, CC Paredes, ... Scientific reports 6 (1), 37858, 2016 | 23 | 2016 |
| Extracting Regulatory Networks of Escherichia coli from RegulonDB H Salgado, I Martínez-Flores, A López-Fuentes, JS García-Sotelo, ... Bacterial Molecular Networks: Methods and Protocols, 179-195, 2012 | 17 | 2012 |
| Genomic Analysis Reveals the Genetic Determinants Associated With Antibiotic Resistance in the Zoonotic Pathogen Campylobacter spp. Distributed Globally D Rivera-Mendoza, I Martínez-Flores, RI Santamaría, L Lozano, ... Frontiers in Microbiology 11, 513070, 2020 | 16 | 2020 |
| Complete Genome Sequences of Eight Rhizobium Symbionts Associated with Common Bean (Phaseolus vulgaris) RI Santamaría, P Bustos, OM Pérez-Carrascal, F Miranda-Sánchez, ... Genome Announcements 5 (30), 10.1128/genomea. 00645-17, 2017 | 14 | 2017 |
| Using RegulonDB, the Escherichia coli K‐12 Gene Regulatory Transcriptional Network Database H Salgado, I Martínez‐Flores, VH Bustamante, K Alquicira‐Hernández, ... Current protocols in bioinformatics 61 (1), 1.32. 1-1.32. 30, 2018 | 13 | 2018 |
Julio Collado-VidesProfessor of Computational Genomics, CCG, UNAMVerified email at ccg.unam.mx
