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Jaak Vilo
Jaak Vilo
Prof. of Bioinformatics, Institute of Computer Science, University of Tartu, Estonia
Potvrđena adresa e-pošte na ut.ee - Početna stranica
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Citirano
Citirano
Godina
Minimum information about a microarray experiment (MIAME)—toward standards for microarray data
A Brazma, P Hingamp, J Quackenbush, G Sherlock, P Spellman, ...
Nature genetics 29 (4), 365-371, 2001
48492001
g: Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update)
U Raudvere, L Kolberg, I Kuzmin, T Arak, P Adler, H Peterson, J Vilo
Nucleic acids research 47 (W1), W191-W198, 2019
39302019
ClustVis: a web tool for visualizing clustering of multivariate data using Principal Component Analysis and heatmap
T Metsalu, J Vilo
Nucleic acids research 43 (W1), W566-W570, 2015
29162015
g: Profiler—a web-based toolset for functional profiling of gene lists from large-scale experiments
J Reimand, M Kull, H Peterson, J Hansen, J Vilo
Nucleic acids research 35 (suppl_2), W193-W200, 2007
12902007
g: Profiler—a web server for functional interpretation of gene lists (2016 update)
J Reimand, T Arak, P Adler, L Kolberg, S Reisberg, H Peterson, J Vilo
Nucleic acids research, gkw199, 2016
12822016
ArrayExpress—a public repository for microarray gene expression data at the EBI
A Brazma, H Parkinson, U Sarkans, M Shojatalab, J Vilo, ...
Nucleic acids research 31 (1), 68-71, 2003
11192003
Gene expression data analysis
A Brazma, J Vilo
FEBS letters 480 (1), 17-24, 2000
9262000
Robust rank aggregation for gene list integration and meta-analysis
R Kolde, S Laur, P Adler, J Vilo
Bioinformatics 28 (4), 573-580, 2012
9052012
g: Profiler—a web server for functional interpretation of gene lists (2011 update)
J Reimand, T Arak, J Vilo
Nucleic acids research 39 (suppl_2), W307-W315, 2011
5652011
A first-generation linkage disequilibrium map of human chromosome 22
E Dawson, GR Abecasis, S Bumpstead, Y Chen, S Hunt, DM Beare, ...
Nature 418 (6897), 544-548, 2002
5412002
Predicting gene regulatory elements in silico on a genomic scale
A Brāzma, I Jonassen, J Vilo, E Ukkonen
Genome research 8 (11), 1202-1215, 1998
4891998
ArrayExpress—a public repository for microarray gene expression data at the EBI
H Parkinson, U Sarkans, M Shojatalab, N Abeygunawardena, S Contrino, ...
Nucleic acids research 33 (suppl_1), D553-D555, 2005
4602005
gprofiler2--an R package for gene list functional enrichment analysis and namespace conversion toolset g: Profiler
L Kolberg, U Raudvere, I Kuzmin, J Vilo, H Peterson
F1000Research 9, 2020
4132020
DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns
K Lokk, V Modhukur, B Rajashekar, K Märtens, R Mägi, R Kolde, ...
Genome biology 15, 1-14, 2014
3892014
MethSurv: a web tool to perform multivariable survival analysis using DNA methylation data
V Modhukur, T Iljasenko, T Metsalu, K Lokk, T Laisk-Podar, J Vilo
Epigenomics 10 (3), 277-288, 2018
3692018
Protein interaction verification and functional annotation by integrated analysis of genome-scale data
P Kemmeren, NL van Berkum, J Vilo, T Bijma, R Donders, A Brazma, ...
Molecular cell 9 (5), 1133-1143, 2002
2712002
Human embryonic stem cell-derived test systems for developmental neurotoxicity: a transcriptomics approach
AK Krug, R Kolde, JA Gaspar, E Rempel, NV Balmer, K Meganathan, ...
Archives of Toxicology, 1-21, 2012
2472012
Meta‐analysis of microRNA expression in lung cancer
U Vosa, T Vooder, R Kolde, J Vilo, A Metspalu, T Annilo
International journal of cancer 132 (12), 2884-2893, 2013
2452013
A preclinical model for ERα-positive breast cancer points to the epithelial microenvironment as determinant of luminal phenotype and hormone response
G Sflomos, V Dormoy, T Metsalu, R Jeitziner, L Battista, V Scabia, ...
Cancer cell 29 (3), 407-422, 2016
2002016
Mining for coexpression across hundreds of datasets using novel rank aggregation and visualization methods
P Adler, R Kolde, M Kull, A Tkachenko, H Peterson, J Reimand, J Vilo
Genome biology 10 (12), 1-11, 2009
1762009
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