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Ahmet Mentes
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High Resolution Cryo-EM Structures of Actin-Bound Myosin States Reveal the Mechanism of Myosin Force Sensing
A Mentes, A Huehn, X Liu, A Zwolak, R Dominguez, H Shuman, EM Ostap, ...
Biophysical Journal 114 (3), 319a, 2018
1382018
Asynchronous replica exchange software for grid and heterogeneous computing
E Gallicchio, J Xia, WF Flynn, B Zhang, S Samlalsingh, A Mentes, ...
Computer physics communications 196, 236-246, 2015
402015
The Q61H mutation decouples KRAS from upstream regulation and renders cancer cells resistant to SHP2 inhibitors
T Gebregiworgis, Y Kano, J St-Germain, N Radulovich, ML Udaskin, ...
Nature communications 12 (1), 6274, 2021
282021
Parameterization of an effective potential for protein–ligand binding from host–guest affinity data
L Wickstrom, N Deng, P He, A Mentes, C Nguyen, MK Gilson, T Kurtzman, ...
Journal of Molecular Recognition 29 (1), 10-21, 2016
282016
Large scale free energy calculations for blind predictions of protein–ligand binding: the D3R Grand Challenge 2015
N Deng, WF Flynn, J Xia, RSK Vijayan, B Zhang, P He, A Mentes, ...
Journal of computer-aided molecular design 30, 743-751, 2016
202016
Binding energy distribution analysis method: Hamiltonian replica exchange with torsional flattening for binding mode prediction and binding free energy estimation
A Mentes, NJ Deng, RSK Vijayan, J Xia, E Gallicchio, RM Levy
Journal of chemical theory and computation 12 (5), 2459-2470, 2016
132016
Free-energy landscape and characteristic forces for the initiation of DNA unzipping
A Mentes, AM Florescu, E Brunk, J Wereszczynski, M Joyeux, ...
Biophysical journal 108 (7), 1727-1738, 2015
122015
Computational and Functional Analyses of HER2 Mutations Reveal Allosteric Activation Mechanisms and Altered Pharmacologic Effects
N Ishiyama, M O'Connor, A Salomatov, D Romashko, S Thakur, A Mentes, ...
Cancer Research 83 (9), 1531-1542, 2023
42023
35MO Discovery and characterization of selective, FGFR1-sparing, inhibitors of FGFR2/3 oncogenic mutations for the treatment of cancers
E Dardenne, F Padilla, S Rasmussen, SN Yang, A Mentes, LS Ogawa, ...
Annals of Oncology 32, S15, 2021
22021
Normal Modes for Dynamic Motions of a Topoisomerase II enzyme upon DNA-Binding and Bending
A Mentes
University of California, Irvine, 2013
12013
State Dependent Dynamic Coupling in Myo1B During the Force Sensitive Transition and MgADP Release
A Mentes, H Shuman, EM Ostap
Biophysical Journal 116 (3), 260a, 2019
2019
Molecular Dynamics and Normal Mode Analysis of Myo1b and Myo1b Deletion Constructs Reveal Coupling between the Lever Arm Helix, N-Terminus, and Active Site
A Mentes, H Shuman, EM Ostap
Biophysical Journal 112 (3), 265a-266a, 2017
2017
Large scale studies of molecular binding processes on computational grids and heterogeneous hardware resources
E Gallicchio, B Zhang, D Kilburg, RK Pal, H Tancredi, J Xia, WF Flynn, ...
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 251, 2016
2016
Supplementary material for: Free Energy Landscape and Characteristic Forces for the Initiation of DNA Unzipping
A Mentes, AM Florescu, E Brunk, J Wereszczynski, M Joyeux, ...
2015
Detailed Conformational Changes Involved in TopoII DNA Binding, Bending and Cleavage
A Mentes
Biophysical Journal 104 (2), 69a, 2013
2013
Molecular dynamic simulations of nucleic acids and a DNA/type II topoisomerase nucleo-protein complex
A Mentes
University of California, Irvine, 2013
2013
Structural and Energetic Details of the DNA-Binding and Cleavage Core of Saccharomyces Cerevisiae Topoisomerases II Linked to DNA through its Active Site Tyrosine
A Mentes, E Kim, I Andricioaei
Biophysical Journal 102 (3), 447a, 2012
2012
Tuesday, February 28, 2012 447a
A Mentes, E Kim, I Andricioaei
Parameterization of an effective potential for protein–ligand binding from host–guest affinity data
N Deng, P He, A Mentes, RM Levy
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Articles 1–19