Michael A Beer
Michael A Beer
Dept. of Biomedical Engineering and McKusick-Nathans Dept. of Genetic Medicine, Johns Hopkins
Verified email at - Homepage
Cited by
Cited by
Transactivation of miR-34a by p53 broadly influences gene expression and promotes apoptosis
TC Chang, EA Wentzel, OA Kent, K Ramachandran, M Mullendore, ...
Molecular cell 26 (5), 745-752, 2007
A comparative encyclopedia of DNA elements in the mouse genome
F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ...
Nature 515 (7527), 355-364, 2014
Expanded encyclopaedias of DNA elements in the human and mouse genomes
JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ...
Nature 583 (7818), 699-710, 2020
Comparisons and physics basis of tokamak transport models and turbulence simulations
AM Dimits, G Bateman, MA Beer, BI Cohen, W Dorland, GW Hammett, ...
Physics of Plasmas 7 (3), 969-983, 2000
Predicting gene expression from sequence
MA Beer, S Tavazoie
Cell 117 (2), 185-198, 2004
Comparison of the transcriptional landscapes between human and mouse tissues
S Lin, Y Lin, JR Nery, MA Urich, A Breschi, CA Davis, A Dobin, C Zaleski, ...
Proceedings of the National Academy of Sciences 111 (48), 17224-17229, 2014
Enhanced Regulatory Sequence Prediction Using Gapped k-mer Features
M Ghandi, D Lee, M Mohammad-Noori, MA Beer
PLoS computational biology 10 (7), e1003711, 2014
Field‐aligned coordinates for nonlinear simulations of tokamak turbulence
MA Beer, SC Cowley, GW Hammett
Physics of Plasmas 2 (7), 2687-2700, 1995
Lin-28B transactivation is necessary for Myc-mediated let-7 repression and proliferation
TC Chang, LR Zeitels, HW Hwang, RR Chivukula, EA Wentzel, M Dews, ...
Proceedings of the National Academy of Sciences 106 (9), 3384-3389, 2009
Quantitative predictions of tokamak energy confinement from first‐principles simulations with kinetic effects
M Kotschenreuther, W Dorland, MA Beer, GW Hammett
Physics of Plasmas 2 (6), 2381-2389, 1995
A method to predict the impact of regulatory variants from DNA sequence
D Lee, DU Gorkin, M Baker, BJ Strober, AL Asoni, AS McCallion, MA Beer
Nature genetics 47 (8), 955-961, 2015
Shearing rate of time-dependent EŚ B flow
TS Hahm, MA Beer, Z Lin, GW Hammett, WW Lee, WM Tang
Physics of Plasmas 6 (3), 922-926, 1999
Developments in the gyrofluid approach to tokamak turbulence simulations
GW Hammett, MA Beer, W Dorland, SC Cowley, SA Smith
Plasma physics and controlled fusion 35 (8), 973, 1993
A common allele in RPGRIP1L is a modifier of retinal degeneration in ciliopathies
H Khanna, EE Davis, CA Murga-Zamalloa, A Estrada-Cuzcano, I Lopez, ...
Nature genetics 41 (6), 739-745, 2009
Toroidal gyrofluid equations for simulations of tokamak turbulence
MA Beer, GW Hammett
Physics of Plasmas 3 (11), 4046-4064, 1996
Discriminative prediction of mammalian enhancers from DNA sequence
D Lee, R Karchin, MA Beer
Genome research 21 (12), 2167-2180, 2011
Turbulent fluctuations in TFTR configurations with reversed magnetic shear
E Mazzucato, SH Batha, M Beer, M Bell, RE Bell, RV Budny, C Bush, ...
Physical review letters 77 (15), 3145, 1996
Gyrofluid simulations of turbulence suppression in reversed-shear experiments on the Tokamak Fusion Test Reactor
MA Beer, GW Hammett, G Rewoldt, EJ Synakowski, MC Zarnstorff, ...
Physics of Plasmas 4 (5), 1792-1799, 1997
Genetic determinants of co-accessible chromatin regions in activated T cells across humans
RE Gate, CS Cheng, AP Aiden, A Siba, M Tabaka, D Lituiev, I Machol, ...
Nature genetics 50 (8), 1140-1150, 2018
gkmSVM: an R package for gapped-kmer SVM
M Ghandi, M Mohammad-Noori, N Ghareghani, D Lee, L Garraway, ...
Bioinformatics 32 (14), 2205-2207, 2016
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