Paola Vera-Licona
Wisdom of crowds for robust gene network inference
D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ...
Nature Methods, 2012
TIGRESS: trustful inference of gene regulation using stability selection
AC Haury, F Mordelet, P Vera-Licona, JP Vert
BMC systems biology 6, 1-17, 2012
Identification of a nerve-associated, lung-resident interstitial macrophage subset with distinct localization and immunoregulatory properties
BB Ural, ST Yeung, P Damani-Yokota, JC Devlin, M de Vries, ...
Science immunology 5 (45), eaax8756, 2020
Discretization of time series data
ES Dimitrova, MPV Licona, J McGee, R Laubenbacher
Journal of Computational Biology 17 (6), 853-868, 2010
The minimal hitting set generation problem: algorithms and computation
A Gainer-Dewar, P Vera-Licona
SIAM Journal on Discrete Mathematics 31 (1), 63-100, 2017
CD169+ macrophages orchestrate innate immune responses by regulating bacterial localization in the spleen
OA Perez, ST Yeung, P Vera-Licona, PA Romagnoli, T Samji, BB Ural, ...
Science immunology 2 (16), eaah5520, 2017
Comparison of Reverse‐Engineering Methods Using an in Silico Network
D Camacho, P VERA LICONA, P Mendes, R Laubenbacher
Annals of the New York Academy of Sciences 1115 (1), 73-89, 2007
Chromatin interaction networks revealed unique connectivity patterns of broad H3K4me3 domains and super enhancers in 3D chromatin
A Thibodeau, EJ Márquez, DG Shin, P Vera-Licona, D Ucar
Scientific Reports 7 (1), 14466, 2017
AlgoRun: a Docker-based packaging system for platform-agnostic implemented algorithms
A Hosny, P Vera-Licona, R Laubenbacher, T Favre
Bioinformatics 32 (15), 2396-2398, 2016
Parameter estimation for Boolean models of biological networks
E Dimitrova, LD García-Puente, F Hinkelmann, AS Jarrah, ...
Theoretical Computer Science 412 (26), 2816-2826, 2011
An Algebra-Based Method for Inferring Gene Regulatory Networks
P Vera-Licona, A Jarrah, LD Garcia-Puente, J McGee, R Laubenbacher
BMC Systems Biology 8 (37), 2014
OCSANA: Optimal Combinations of Interventions from Network Analysis
P Vera-Licona, E Bonnet, E Barillot, A Zinovyev
Bioinformatics 29 (12), 1571-1573, 2013
An efficient algorithm for the phase space structure of linear dynamical systems over finite fields
A Jarrah, R Laubenbacher, P Vera-Licona
Macrophage mediated recognition and clearance of Borrelia burgdorferi elicits MyD88-dependent and-independent phagosomal signals that contribute to phagocytosis and inflammation
SJ Benjamin, KL Hawley, P Vera-Licona, CJ La Vake, JL Cervantes, ...
BMC immunology 22 (1), 1-16, 2021
QuIN: a web server for querying and visualizing chromatin interaction networks
A Thibodeau, EJ Márquez, O Luo, Y Ruan, F Menghi, DG Shin, ML Stitzel, ...
PLoS computational biology 12 (6), e1004809, 2016
Reverse engineering of molecular networks from a common combinatorial approach
B DasGupta, P Vera-Licona, E Sontag, 2011
NETISCE: A Network-Based Tool for Cell Fate Reprogramming
L Marazzi, M Shah, S Balakrishnan, A Patil, P Vera-Licona
NPJ Systems Biology and Applications 8 (21), 2022
Benchmarking time-series data discretization on inference methods
Y Li, T Jann, P Vera-Licona
Bioinformatics 35 (17), 3102 - 3109, 2019
Inference of ecological interaction networks
P Vera-Licona, R Laubenbacher
Annales Zoologici Fennici 45 (5), 459-464, 2008
‘Model your genes the mathematical way’—a mathematical biology workshop for secondary school teachers
AM Martins, P Vera-Licona, R Laubenbacher
Teaching Mathematics and Its Applications: International Journal of the IMA …, 2008
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