| Clinical information extraction applications: a literature review Y Wang, L Wang, M Rastegar-Mojarad, S Moon, F Shen, N Afzal, S Liu, ... Journal of biomedical informatics 77, 34-49, 2018 | 354 | 2018 |
| A comparison of word embeddings for the biomedical natural language processing Y Wang, S Liu, N Afzal, M Rastegar-Mojarad, L Wang, F Shen, ... Journal of biomedical informatics 87, 12-20, 2018 | 202 | 2018 |
| A clinical text classification paradigm using weak supervision and deep representation Y Wang, S Sohn, S Liu, F Shen, L Wang, EJ Atkinson, S Amin, H Liu BMC medical informatics and decision making 19 (1), 1-13, 2019 | 56 | 2019 |
| Deep phenotyping on electronic health records facilitates genetic diagnosis by clinical exomes JH Son, G Xie, C Yuan, L Ena, Z Li, A Goldstein, L Huang, L Wang, ... The American Journal of Human Genetics 103 (1), 58-73, 2018 | 51 | 2018 |
| MedSTS: a resource for clinical semantic textual similarity Y Wang, N Afzal, S Fu, L Wang, F Shen, M Rastegar-Mojarad, H Liu Language Resources and Evaluation 54 (1), 57-72, 2020 | 43 | 2020 |
| Exploring the pharmacogenomics knowledge base (PharmGKB) for repositioning breast cancer drugs by leveraging Web ontology language (OWL) and cheminformatics approaches Q Zhu, C Tao, F Shen, CG Chute Biocomputing 2014, 172-182, 2014 | 38 | 2014 |
| Dependency and AMR embeddings for drug-drug interaction extraction from biomedical literature Y Wang, S Liu, M Rastegar-Mojarad, L Wang, F Shen, F Liu, H Liu Proceedings of the 8th acm international conference on bioinformatics …, 2017 | 33 | 2017 |
| Knowledge discovery from biomedical ontologies in cross domains F Shen, Y Lee PloS one 11 (8), e0160005, 2016 | 30 | 2016 |
| Smartspace: Multiagent based distributed platform for semantic service discovery S Dasgupta, A Aroor, F Shen, Y Lee IEEE Transactions on Systems, Man, and Cybernetics: Systems 44 (7), 805-821, 2013 | 25 | 2013 |
| Integrating structured and unstructured EHR data using an FHIR-based type system: a case study with medication data N Hong, A Wen, F Shen, S Sohn, S Liu, H Liu, G Jiang AMIA Summits on Translational Science Proceedings 2018, 74, 2018 | 24 | 2018 |
| Phenotypic analysis of clinical narratives using human phenotype ontology F Shen, L Wang, H Liu Studies in health technology and informatics 245, 581, 2017 | 23 | 2017 |
| Overview of the BioCreative/OHNLP challenge 2018 task 2: clinical semantic textual similarity Y Wang, N Afzal, S Liu, M Rastegar-Mojarad, L Wang, F Shen, S Fu, H Liu Proceedings of the BioCreative/OHNLP Challenge 2018, 2018 | 22 | 2018 |
| Leveraging collaborative filtering to accelerate rare disease diagnosis F Shen, S Liu, Y Wang, L Wang, N Afzal, H Liu AMIA Annual Symposium Proceedings 2017, 1554, 2017 | 22 | 2017 |
| Extracting chemical–protein relations using attention-based neural networks S Liu, F Shen, R Komandur Elayavilli, Y Wang, M Rastegar-Mojarad, ... Database 2018, 2018 | 21 | 2018 |
| Rare disease knowledge enrichment through a data-driven approach F Shen, Y Zhao, L Wang, MR Mojarad, Y Wang, S Liu, H Liu BMC medical informatics and decision making 19 (1), 1-11, 2019 | 20 | 2019 |
| Collaborative mobile-cloud computing for civil infrastructure condition inspection ZQ Chen, J Chen, F Shen, Y Lee Journal of Computing in Civil Engineering 29 (5), 04014066, 2015 | 20 | 2015 |
| HPO2Vec+: leveraging heterogeneous knowledge resources to enrich node embeddings for the human phenotype ontology F Shen, S Peng, Y Fan, A Wen, S Liu, Y Wang, L Wang, H Liu Journal of biomedical informatics 96, 103246, 2019 | 18 | 2019 |
| PEMAR: A pervasive middleware for activity recognition with smart phones P Vaka, F Shen, M Chandrashekar, Y Lee 2015 IEEE International Conference on Pervasive Computing and Communication …, 2015 | 18 | 2015 |
| Systematic identification of latent disease-gene associations from PubMed articles Y Zhang, F Shen, MR Mojarad, D Li, S Liu, C Tao, Y Yu, H Liu PloS one 13 (1), e0191568, 2018 | 17 | 2018 |
| BmQGen: Biomedical query generator for knowledge discovery F Shen, H Liu, S Sohn, DW Larson, Y Lee 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2015 | 17 | 2015 |
Hongfang LiuProfessor of Biomedical Informatics, Mayo ClinicVerified email at mayo.edu
