Feichen Shen, PhD
Feichen Shen, PhD
Sr. Principal Scientist, R&D at Bristol Myers Squibb | Assistant Professor at Mayo Clinic
Verified email at bms.com - Homepage
Title
Cited by
Cited by
Year
Clinical information extraction applications: a literature review
Y Wang, L Wang, M Rastegar-Mojarad, S Moon, F Shen, N Afzal, S Liu, ...
Journal of biomedical informatics 77, 34-49, 2018
3542018
A comparison of word embeddings for the biomedical natural language processing
Y Wang, S Liu, N Afzal, M Rastegar-Mojarad, L Wang, F Shen, ...
Journal of biomedical informatics 87, 12-20, 2018
2022018
A clinical text classification paradigm using weak supervision and deep representation
Y Wang, S Sohn, S Liu, F Shen, L Wang, EJ Atkinson, S Amin, H Liu
BMC medical informatics and decision making 19 (1), 1-13, 2019
562019
Deep phenotyping on electronic health records facilitates genetic diagnosis by clinical exomes
JH Son, G Xie, C Yuan, L Ena, Z Li, A Goldstein, L Huang, L Wang, ...
The American Journal of Human Genetics 103 (1), 58-73, 2018
512018
MedSTS: a resource for clinical semantic textual similarity
Y Wang, N Afzal, S Fu, L Wang, F Shen, M Rastegar-Mojarad, H Liu
Language Resources and Evaluation 54 (1), 57-72, 2020
432020
Exploring the pharmacogenomics knowledge base (PharmGKB) for repositioning breast cancer drugs by leveraging Web ontology language (OWL) and cheminformatics approaches
Q Zhu, C Tao, F Shen, CG Chute
Biocomputing 2014, 172-182, 2014
382014
Dependency and AMR embeddings for drug-drug interaction extraction from biomedical literature
Y Wang, S Liu, M Rastegar-Mojarad, L Wang, F Shen, F Liu, H Liu
Proceedings of the 8th acm international conference on bioinformatics …, 2017
332017
Knowledge discovery from biomedical ontologies in cross domains
F Shen, Y Lee
PloS one 11 (8), e0160005, 2016
302016
Smartspace: Multiagent based distributed platform for semantic service discovery
S Dasgupta, A Aroor, F Shen, Y Lee
IEEE Transactions on Systems, Man, and Cybernetics: Systems 44 (7), 805-821, 2013
252013
Integrating structured and unstructured EHR data using an FHIR-based type system: a case study with medication data
N Hong, A Wen, F Shen, S Sohn, S Liu, H Liu, G Jiang
AMIA Summits on Translational Science Proceedings 2018, 74, 2018
242018
Phenotypic analysis of clinical narratives using human phenotype ontology
F Shen, L Wang, H Liu
Studies in health technology and informatics 245, 581, 2017
232017
Overview of the BioCreative/OHNLP challenge 2018 task 2: clinical semantic textual similarity
Y Wang, N Afzal, S Liu, M Rastegar-Mojarad, L Wang, F Shen, S Fu, H Liu
Proceedings of the BioCreative/OHNLP Challenge 2018, 2018
222018
Leveraging collaborative filtering to accelerate rare disease diagnosis
F Shen, S Liu, Y Wang, L Wang, N Afzal, H Liu
AMIA Annual Symposium Proceedings 2017, 1554, 2017
222017
Extracting chemical–protein relations using attention-based neural networks
S Liu, F Shen, R Komandur Elayavilli, Y Wang, M Rastegar-Mojarad, ...
Database 2018, 2018
212018
Rare disease knowledge enrichment through a data-driven approach
F Shen, Y Zhao, L Wang, MR Mojarad, Y Wang, S Liu, H Liu
BMC medical informatics and decision making 19 (1), 1-11, 2019
202019
Collaborative mobile-cloud computing for civil infrastructure condition inspection
ZQ Chen, J Chen, F Shen, Y Lee
Journal of Computing in Civil Engineering 29 (5), 04014066, 2015
202015
HPO2Vec+: leveraging heterogeneous knowledge resources to enrich node embeddings for the human phenotype ontology
F Shen, S Peng, Y Fan, A Wen, S Liu, Y Wang, L Wang, H Liu
Journal of biomedical informatics 96, 103246, 2019
182019
PEMAR: A pervasive middleware for activity recognition with smart phones
P Vaka, F Shen, M Chandrashekar, Y Lee
2015 IEEE International Conference on Pervasive Computing and Communication …, 2015
182015
Systematic identification of latent disease-gene associations from PubMed articles
Y Zhang, F Shen, MR Mojarad, D Li, S Liu, C Tao, Y Yu, H Liu
PloS one 13 (1), e0191568, 2018
172018
BmQGen: Biomedical query generator for knowledge discovery
F Shen, H Liu, S Sohn, DW Larson, Y Lee
2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2015
172015
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