Feichen Shen, PhD, FAMIA

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Hongfang LiuProfessor of Biomedical Informatics, Mayo ClinicVerified email at mayo.edu
Yanshan Wang, PhD, FAMIAAssistant Professor and Vice Chair of Research, University of PittsburghVerified email at pitt.edu
Liwei Wang, MD., PhDAssistant Professor of Biomedical Informatics, Mayo Clinic Alix School of MedicineVerified email at mayo.edu
Sijia LiuPrincipal Data Science Analyst, Mayo ClinicVerified email at mayo.edu
Sunghwan SohnAssociate Professor of Biomedical Informatics, Mayo ClinicVerified email at mayo.edu
Naveed Afzal Ph.D.Lead Data Scientist, HumanaVerified email at humana.com
Andrew WenMayo ClinicVerified email at mayo.edu
Sunyang FuMayo ClinicVerified email at mayo.edu
Sungrim (Riea) MoonSr. Translational Informatics Analyst, Assistant Professor of Biomedical Informatics, Mayo ClinicVerified email at mayo.edu
Yugyung LeeProfessor of Computer Science Electrical Engineering, University of Missouri - Kansas CityVerified email at umkc.edu
Yiqing ZhaoMayo ClinicVerified email at mayo.edu
Na HongMayo ClinicVerified email at mayo.edu
Cui TaoProfessor, University of Texas Health Science Center at HoustonVerified email at uth.tmc.edu
Saeed MehrabiSecure Exchange SolutionsVerified email at secureexsolutions.com
Yadan FanSenior NLP Research Scientist, Nuance Communications (Microsoft)Verified email at umn.edu
Christopher G. ChuteBloomberg Distinguished Professor of Health Informatics, Johns HopkinsVerified email at jhu.edu
Anoop AroorPhd student at City University of New YorkVerified email at gc.cuny.edu
Sourish DasguptaDA-IICT, Founder @ RAx (https://raxter.io)Verified email at raxter.io
Yue YuBioinformatician, Mayo ClinicVerified email at mayo.edu
Ahmad P. Tafti (Ahmad Tafti)Assistant Professor and Graduate Program Director, University of Southern MaineVerified email at maine.edu

Feichen Shen, PhD, FAMIA

Sr. Principal Scientist at Bristol Myers Squibb, Adjunct Associate Professor at Mayo Clinic

Verified email at bms.com - Homepage

AI in Healthcare Machine/Deep Learning Biomedical Informatics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Clinical information extraction applications: a literature review Y Wang, L Wang, M Rastegar-Mojarad, S Moon, F Shen, N Afzal, S Liu, ... Journal of biomedical informatics 77, 34-49, 2018	488	2018
A comparison of word embeddings for the biomedical natural language processing Y Wang, S Liu, N Afzal, M Rastegar-Mojarad, L Wang, F Shen, ... Journal of biomedical informatics 87, 12-20, 2018	282	2018
A clinical text classification paradigm using weak supervision and deep representation Y Wang, S Sohn, S Liu, F Shen, L Wang, EJ Atkinson, S Amin, H Liu BMC medical informatics and decision making 19 (1), 1-13, 2019	104	2019
MedSTS: a resource for clinical semantic textual similarity Y Wang, N Afzal, S Fu, L Wang, F Shen, M Rastegar-Mojarad, H Liu Language Resources and Evaluation 54 (1), 57-72, 2020	77	2020
Deep phenotyping on electronic health records facilitates genetic diagnosis by clinical exomes JH Son, G Xie, C Yuan, L Ena, Z Li, A Goldstein, L Huang, L Wang, ... The American Journal of Human Genetics 103 (1), 58-73, 2018	73	2018
Clinical concept extraction: a methodology review S Fu, D Chen, H He, S Liu, S Moon, KJ Peterson, F Shen, L Wang, ... Journal of biomedical informatics 109, 103526, 2020	49	2020
Exploring the pharmacogenomics knowledge base (PharmGKB) for repositioning breast cancer drugs by leveraging Web ontology language (OWL) and cheminformatics approaches Q Zhu, CUI Tao, F Shen, CG Chute Biocomputing 2014, 172-182, 2014	44	2014
Dependency and AMR embeddings for drug-drug interaction extraction from biomedical literature Y Wang, S Liu, M Rastegar-Mojarad, L Wang, F Shen, F Liu, H Liu Proceedings of the 8th acm international conference on bioinformatics …, 2017	38	2017
Integrating structured and unstructured EHR data using an FHIR-based type system: a case study with medication data N Hong, A Wen, F Shen, S Sohn, S Liu, H Liu, G Jiang AMIA Summits on Translational Science Proceedings 2018, 74, 2018	35	2018
Knowledge discovery from biomedical ontologies in cross domains F Shen, Y Lee PloS one 11 (8), e0160005, 2016	30	2016
Overview of the BioCreative/OHNLP challenge 2018 task 2: clinical semantic textual similarity Y Wang, N Afzal, S Liu, M Rastegar-Mojarad, L Wang, F Shen, S Fu, H Liu Proceedings of the BioCreative/OHNLP Challenge 2018, 2018	29	2018
SMARTSPACE: Multiagent based distributed platform for semantic service discovery S Dasgupta, A Aroor, F Shen, Y Lee IEEE Transactions on Systems, Man, and Cybernetics: Systems 44 (7), 805-821, 2013	27	2013
Extracting chemical–protein relations using attention-based neural networks S Liu, F Shen, R Komandur Elayavilli, Y Wang, M Rastegar-Mojarad, ... Database 2018, 2018	26	2018
Collaborative mobile-cloud computing for civil infrastructure condition inspection ZQ Chen, J Chen, F Shen, Y Lee J. Comput. Civ. Eng 10, 1061, 2013	26	2013
Leveraging collaborative filtering to accelerate rare disease diagnosis F Shen, S Liu, Y Wang, L Wang, N Afzal, H Liu AMIA Annual Symposium Proceedings 2017, 1554, 2017	25	2017
Developing a scalable FHIR-based clinical data normalization pipeline for standardizing and integrating unstructured and structured electronic health record data N Hong, A Wen, F Shen, S Sohn, C Wang, H Liu, G Jiang JAMIA open 2 (4), 570-579, 2019	24	2019
Phenotypic analysis of clinical narratives using human phenotype ontology F Shen, L Wang, H Liu Studies in health technology and informatics 245, 581, 2017	24	2017
HPO2Vec+: Leveraging heterogeneous knowledge resources to enrich node embeddings for the Human Phenotype Ontology F Shen, S Peng, Y Fan, A Wen, S Liu, Y Wang, L Wang, H Liu Journal of biomedical informatics 96, 103246, 2019	22	2019
Utilization of electronic medical records and biomedical literature to support the diagnosis of rare diseases using data fusion and collaborative filtering approaches F Shen, S Liu, Y Wang, A Wen, L Wang, H Liu JMIR medical informatics 6 (4), e11301, 2018	22	2018
The 2019 n2c2/ohnlp track on clinical semantic textual similarity: overview Y Wang, S Fu, F Shen, S Henry, O Uzuner, H Liu JMIR medical informatics 8 (11), e23375, 2020	21	2020

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