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Neva Cherniavsky Durand, Ph.D.
Neva Cherniavsky Durand, Ph.D.
Senior Scientist, Broad Institute
Verified email at broadinstitute.org - Homepage
Title
Cited by
Cited by
Year
A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping
SSP Rao, MH Huntley, NC Durand, EK Stamenova, ID Bochkov, ...
Cell 159 (7), 1665-1680, 2014
55332014
Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes
AL Sanborn, SSP Rao, SC Huang, NC Durand, MH Huntley, AI Jewett, ...
Proceedings of the National Academy of Sciences 112 (47), E6456-E6465, 2015
14182015
Juicer provides a one-click system for analyzing loop-resolution Hi-C experiments
NC Durand, MS Shamim, I Machol, SSP Rao, MH Huntley, ES Lander, ...
Cell systems 3 (1), 95-98, 2016
13172016
De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds
O Dudchenko, SS Batra, AD Omer, SK Nyquist, M Hoeger, NC Durand, ...
Science 356 (6333), 92-95, 2017
9342017
Juicebox provides a visualization system for Hi-C contact maps with unlimited zoom
NC Durand, JT Robinson, MS Shamim, I Machol, JP Mesirov, ES Lander, ...
Cell systems 3 (1), 99-101, 2016
7812016
Activity-by-contact model of enhancer–promoter regulation from thousands of CRISPR perturbations
CP Fulco, J Nasser, TR Jones, G Munson, DT Bergman, V Subramanian, ...
Nature genetics 51 (12), 1664-1669, 2019
3962019
The energetics and physiological impact of cohesin extrusion
L Vian, A Pękowska, SSP Rao, KR Kieffer-Kwon, S Jung, L Baranello, ...
Cell 173 (5), 1165-1178. e20, 2018
3802018
Deletion of DXZ4 on the human inactive X chromosome alters higher-order genome architecture
EM Darrow, MH Huntley, O Dudchenko, EK Stamenova, NC Durand, ...
Proceedings of the National Academy of Sciences 113 (31), E4504-E4512, 2016
2432016
Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling
G Nir, I Farabella, C Pérez Estrada, CG Ebeling, BJ Beliveau, HM Sasaki, ...
PLoS genetics 14 (12), e1007872, 2018
1922018
Juicebox. js provides a cloud-based visualization system for Hi-C data
JT Robinson, D Turner, NC Durand, H Thorvaldsdóttir, JP Mesirov, ...
Cell systems 6 (2), 256-258. e1, 2018
1802018
The Juicebox Assembly Tools module facilitates de novo assembly of mammalian genomes with chromosome-length scaffolds for under $1000
O Dudchenko, MS Shamim, SS Batra, NC Durand, NT Musial, R Mostofa, ...
BioRxiv, 254797, 2018
1512018
Genetic determinants of co-accessible chromatin regions in activated T cells across humans
RE Gate, CS Cheng, AP Aiden, A Siba, M Tabaka, D Lituiev, I Machol, ...
Nature genetics 50 (8), 1140-1150, 2018
1222018
Grammar-based compression of DNA sequences
N Cherniavsky, R Ladner
DIMACS Working Group on The Burrows-Wheeler Transform 21, 2004
632004
Hybrid de novo genome assembly and centromere characterization of the gray mouse lemur (Microcebus murinus)
PA Larsen, RA Harris, Y Liu, SC Murali, CR Campbell, AD Brown, ...
BMC biology 15 (1), 1-17, 2017
532017
Variable frame rate for low power mobile sign language communication
N Cherniavsky, AC Cavender, RE Ladner, EA Riskin
Proceedings of the 9th international ACM SIGACCESS conference on Computers …, 2007
352007
Multistage: A MINMAX bit allocation algorithm for video coders
N Cherniavsky, G Shavit, MF Ringenburg, RE Ladner, EA Riskin
IEEE Transactions on Circuits and Systems for Video Technology 17 (1), 59-67, 2006
332006
A rapid, low cost, and highly sensitive SARS-CoV-2 diagnostic based on whole genome sequencing
BG St Hilaire, NC Durand, N Mitra, SG Pulido, R Mahajan, A Blackburn, ...
BioRxiv, 2020
302020
Dynamic pricing for impatient bidders
N Bansal, N Chen, N Cherniavsky, A Rurda, B Schieber, M Sviridenko
ACM Transactions on Algorithms (TALG) 6 (2), 1-21, 2010
302010
CTCF looping is established during gastrulation in medaka embryos
R Nakamura, Y Motai, M Kumagai, CL Wike, H Nishiyama, Y Nakatani, ...
Genome research 31 (6), 968-980, 2021
282021
Chromatin architecture transitions from zebrafish sperm through early embryogenesis
CL Wike, Y Guo, M Tan, R Nakamura, DK Shaw, N Díaz, ...
Genome research 31 (6), 981-994, 2021
272021
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