Erik Lindahl

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Berk HessKTH Royal Institute of Technology, Stockholm, Sweden; Science for Life Laboratory, Stockholm, SwedenVerified email at scilifelab.se
David van der SpoelProfessor of Biology, Uppsala UniversityVerified email at xray.bmc.uu.se
Mark AbrahamVoxo ABVerified email at kth.se
Szilárd PállResearcher, PDC KTH Royal Institute of TechnologyVerified email at kth.se
Peter KassonProfessor, Georgia Tech and University of Virginia and Wallenberg Academy Fellow, Uppsala UniversityVerified email at gatech.edu
Björn ForsbergKarolinska InstitutetVerified email at dbb.su.se
Pär BjelkmarVerified email at inera.se
Rebecca J HowardSenior Researcher, Stockholm UniversityVerified email at scilifelab.se
Carsten KutznerMax Planck Institute for Multidisciplinary SciencesVerified email at gwdg.de
Roland SchulzIntelVerified email at rschulz.eu
Dari KimaniusChan Zuckerberg Institute for Advanced Biological ImagingVerified email at czii.org
Per LarssonAssociate Professor, Uppsala UniversityVerified email at farmaci.uu.se
Jeremy C SmithUniversity of Tennessee KnoxvilleVerified email at ornl.gov
Rossen ApostolovResearcher, KTH Royal Institute of TechnologyVerified email at kth.se
Alan E. MarkProfessor of Biophysical Chemistry, University of QueenslandVerified email at uq.edu.au
Gerrit GroenhofDepartment of Chemistry & Nanoscience Center, University of JyväskyläVerified email at jyu.fi
Marc DelarueInstitut Pasteur/CNRS FranceVerified email at pasteur.fr
Olle EdholmProfessor, theoretical physics, KTH Verified email at kth.se
Magnus LundborgResearcher at KTH, SciLifeLab, SwedenVerified email at scilifelab.se
Arne ElofssonScience for Life Laboratory and department of Biochemistry and Biophysics, Stockholm UniversityVerified email at bioinfo.se

Erik Lindahl

Professor of Biophysics, Linköping University

Verified email at liu.se - Homepage

Life science Membrane proteins cryo-EM molecular dynamics AI


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GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers MJ Abraham, T Murtola, R Schulz, S Páll, JC Smith, B Hess, E Lindahl SoftwareX 1, 19-25, 2015	20881	2015
GROMACS: fast, flexible, and free D Van Der Spoel, E Lindahl, B Hess, G Groenhof, AE Mark, ... Journal of computational chemistry 26 (16), 1701-1718, 2005	18588	2005
GROMACS 4: algorithms for highly efficient, load-balanced, and scalable molecular simulation B Hess, C Kutzner, D Van Der Spoel, E Lindahl Journal of chemical theory and computation 4 (3), 435-447, 2008	17233	2008
GROMACS 3.0: a package for molecular simulation and trajectory analysis E Lindahl, B Hess, D Van Der Spoel Molecular modeling annual 7, 306-317, 2001	8094	2001
GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit S Pronk, S Páll, R Schulz, P Larsson, P Bjelkmar, R Apostolov, MR Shirts, ... Bioinformatics 29 (7), 845-854, 2013	7813	2013
New tools for automated high-resolution cryo-EM structure determination in RELION-3 J Zivanov, T Nakane, BO Forsberg, D Kimanius, WJH Hagen, E Lindahl, ... elife 7, e42166, 2018	4433	2018
Tackling exascale software challenges in molecular dynamics simulations with GROMACS S Páll, MJ Abraham, C Kutzner, B Hess, E Lindahl Solving Software Challenges for Exascale: International Conference on …, 2015	1276*	2015
Implementation of the CHARMM force field in GROMACS: analysis of protein stability effects from correction maps, virtual interaction sites, and water models P Bjelkmar, P Larsson, MA Cuendet, B Hess, E Lindahl Journal of chemical theory and computation 6 (2), 459-466, 2010	1192	2010
Accelerated cryo-EM structure determination with parallelisation using GPUs in RELION-2 D Kimanius, BO Forsberg, SHW Scheres, E Lindahl elife 5, e18722, 2016	1019	2016
GROMACS user manual version 3.2 D van der Spoel, E Lindahl, B Hess, AR Van Buuren, E Apol, ... Nijenborgh 4, 9747, 2004	909	2004
Mesoscopic undulations and thickness fluctuations in lipid bilayers from molecular dynamics simulations E Lindahl, O Edholm Biophysical journal 79 (1), 426-433, 2000	744	2000
the GROMACS development team MJ Abraham, D Van Der Spoel, E Lindahl, B Hess GROMACS user manual version 5 (4), 2016	621*	2016
Molecular dynamics simulations of phospholipid bilayers with cholesterol C Hofsäß, E Lindahl, O Edholm Biophysical journal 84 (4), 2192-2206, 2003	621	2003
Heterogeneous parallelization and acceleration of molecular dynamics simulations in GROMACS S Páll, A Zhmurov, P Bauer, M Abraham, M Lundborg, A Gray, B Hess, ... The Journal of chemical physics 153 (13), 2020	551	2020
Characterisation of molecular motions in cryo-EM single-particle data by multi-body refinement in RELION T Nakane, D Kimanius, E Lindahl, SHW Scheres elife 7, e36861, 2018	471	2018
Molecular recognition of a single sphingolipid species by a protein’s transmembrane domain FX Contreras, AM Ernst, P Haberkant, P Björkholm, E Lindahl, B Gönen, ... Nature 481 (7382), 525-529, 2012	402	2012
Membrane proteins: molecular dynamics simulations E Lindahl, MSP Sansom Current opinion in structural biology 18 (4), 425-431, 2008	378	2008
NOMAD-Ref: visualization, deformation and refinement of macromolecular structures based on all-atom normal mode analysis E Lindahl, C Azuara, P Koehl, M Delarue Nucleic acids research 34 (suppl_2), W52-W56, 2006	377	2006
Simulation of the spontaneous aggregation of phospholipids into bilayers SJ Marrink, E Lindahl, O Edholm, AE Mark Journal of the American Chemical Society 123 (35), 8638-8639, 2001	364	2001
Prediction of membrane-protein topology from first principles A Bernsel, H Viklund, J Falk, E Lindahl, G Von Heijne, A Elofsson Proceedings of the National Academy of Sciences 105 (20), 7177-7181, 2008	356	2008

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