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Guohua Jin
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Maximum likelihood of phylogenetic networks
G Jin, L Nakhleh, S Snir, T Tuller
Bioinformatics 22 (21), 2604-2611, 2006
1372006
High Performance Fortran compilation techniques for parallelizing scientific codes
V Adve, G Jin, J Mellor-Crummey, Q Yi
SC'98: Proceedings of the 1998 ACM/IEEE Conference on Supercomputing, 11-11, 1998
1111998
A new vision for Coarray Fortran
J Mellor-Crummey, L Adhianto, WN Scherer III, G Jin
Proceedings of the Third Conference on Partitioned Global Address Space …, 2009
962009
Inferring phylogenetic networks by the maximum parsimony criterion: a case study
G Jin, L Nakhleh, S Snir, T Tuller
Molecular Biology and Evolution 24 (1), 324-337, 2007
952007
Reconstructing phylogenetic networks using maximum parsimony
L Nakhleh, G Jin, F Zhao, J Mellor-Crummey
2005 IEEE Computational Systems Bioinformatics Conference (CSB'05), 93-102, 2005
832005
SFCGen: A framework for efficient generation of multi-dimensional space-filling curves by recursion
G Jin, J Mellor-Crummey
ACM Transactions on Mathematical Software (TOMS) 31 (1), 120-148, 2005
742005
Efficient parsimony-based methods for phylogenetic network reconstruction
G Jin, L Nakhleh, S Snir, T Tuller
Bioinformatics 23 (2), e123-e128, 2007
692007
Increasing temporal locality with skewing and recursive blocking
G Jin, J Mellor-Crummey, R Fowler
SC'01: Proceedings of the 2001 ACM/IEEE Conference on Supercomputing, 57-57, 2001
512001
Advanced optimization strategies in the Rice dHPF compiler
J Mellor‐Crummey, V Adve, B Broom, D Chavarrķa‐Miranda, R Fowler, ...
Concurrency and Computation: Practice and Experience 14 (8‐9), 741-767, 2002
472002
Implementation and performance evaluation of the hpc challenge benchmarks in coarray fortran 2.0
G Jin, J Mellor-Crummey, L Adhianto, WN Scherer III, C Yang
2011 IEEE International Parallel & Distributed Processing Symposium, 1089-1100, 2011
392011
Improving performance with integrated program transformations
G Jin, J Mellor-Crummey, A Qasem
372004
Parsimony score of phylogenetic networks: hardness results and a linear-time heuristic
G Jin, L Nakhleh, S Snir, T Tuller
IEEE/ACM Transactions on Computational Biology and Bioinformatics 6 (3), 495-505, 2008
292008
Using space-filling curves for computation reordering
G Jin, J Mellor-Crummey
Proceedings of the Los Alamos Computer Science Institute Sixth Annual Symposium, 2005
252005
Bootstrap-based support of HGT inferred by maximum parsimony
HJ Park, G Jin, L Nakhleh
BMC Evolutionary Biology 10 (1), 1-11, 2010
162010
Hiding latency in coarray fortran 2.0
WN Scherer III, L Adhianto, G Jin, J Mellor-Crummey, C Yang
Proceedings of the Fourth Conference on Partitioned Global Address Space …, 2010
162010
A new linear-time heuristic algorithm for computing the parsimony score of phylogenetic networks: Theoretical bounds and empirical performance
G Jin, L Nakhleh, S Snir, T Tuller
International Symposium on Bioinformatics Research and Applications, 61-72, 2007
162007
Managing locality in grand challenge applications: a case study of the gyrokinetic toroidal code
G Marin, G Jin, J Mellor-Crummey
Journal of Physics: Conference Series 125 (1), 012087, 2008
142008
HPFBench: a high performance Fortran benchmark suite
YC Hu, G Jin, SL Johnsson, D Kehagias, N Shalaby
ACM Transactions on Mathematical Software (TOMS) 26 (1), 99-149, 2000
142000
Experiences tuning SMG98: a semicoarsening multigrid benchmark based on the hypre library
G Jin, J Mellor-Crummey
Proceedings of the 16th international conference on Supercomputing, 305-314, 2002
132002
Algorithmic strategies for estimating the amount of reticulation from a collection of gene trees
H Park, G Jin, L Nakhleh
Proceedings of the 9th Annual International Conference on Computational …, 2010
112010
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