| The sequence of the human genome JC Venter, MD Adams, EW Myers, PW Li, RJ Mural, GG Sutton, HO Smith, ... science 291 (5507), 1304-1351, 2001 | 20229 | 2001 |
| Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation S Koren, BP Walenz, K Berlin, JR Miller, NH Bergman, AM Phillippy Genome research 27 (5), 722-736, 2017 | 5831 | 2017 |
| The Genome Sequence of the Malaria Mosquito Anopheles gambiae RA Holt, GM Subramanian, A Halpern, GG Sutton, R Charlab, ... science 298 (5591), 129-149, 2002 | 2546 | 2002 |
| The diploid genome sequence of an individual human S Levy, G Sutton, PC Ng, L Feuk, AL Halpern, BP Walenz, N Axelrod, ... PLoS biology 5 (10), e254, 2007 | 2305 | 2007 |
| Evolution of genes and genomes on the Drosophila phylogeny AG Clark, MB Eisen, DR Smith, CM Bergman, B Oliver, TA Markow, ... Nature 450 (7167), 203-18, 2007 | 2252 | 2007 |
| The complete sequence of a human genome S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ... Science 376 (6588), 44-53, 2022 | 1764 | 2022 |
| Evolutionary and biomedical insights from the rhesus macaque genome RA Gibbs, J Rogers, MG Katze, R Bumgarner, GM Weinstock, ER Mardis, ... science 316 (5822), 222-234, 2007 | 1468 | 2007 |
| Towards complete and error-free genome assemblies of all vertebrate species A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti, S Koren, ... Nature 592 (7856), 737-746, 2021 | 1364 | 2021 |
| Hybrid error correction and de novo assembly of single-molecule sequencing reads S Koren, MC Schatz, BP Walenz, J Martin, JT Howard, G Ganapathy, ... Nature biotechnology 30 (7), 693-700, 2012 | 1190 | 2012 |
| Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies A Rhie, BP Walenz, S Koren, AM Phillippy Genome biology 21, 1-27, 2020 | 1125 | 2020 |
| The Atlantic salmon genome provides insights into rediploidization S Lien, BF Koop, SR Sandve, JR Miller, MP Kent, T Nome, TR Hvidsten, ... Nature 533 (7602), 200-205, 2016 | 998 | 2016 |
| The dynamic genome of Hydra JA Chapman, EF Kirkness, O Simakov, SE Hampson, T Mitros, ... Nature 464 (7288), 592-596, 2010 | 860 | 2010 |
| Aggressive assembly of pyrosequencing reads with mates JR Miller, AL Delcher, S Koren, E Venter, BP Walenz, A Brownley, ... Bioinformatics 24 (24), 2818-2824, 2008 | 676 | 2008 |
| The bonobo genome compared with the chimpanzee and human genomes K Prüfer, K Munch, I Hellmann, K Akagi, JR Miller, B Walenz, S Koren, ... Nature 486 (7404), 527-531, 2012 | 653 | 2012 |
| Integrating Hi-C links with assembly graphs for chromosome-scale assembly J Ghurye, A Rhie, BP Walenz, A Schmitt, S Selvaraj, M Pop, AM Phillippy, ... PLoS computational biology 15 (8), e1007273, 2019 | 645 | 2019 |
| Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle EF Kirkness, BJ Haas, W Sun, HR Braig, MA Perotti, JM Clark, SH Lee, ... Proceedings of the National Academy of Sciences 107 (27), 12168-12173, 2010 | 569 | 2010 |
| HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads S Nurk, BP Walenz, A Rhie, MR Vollger, GA Logsdon, R Grothe, KH Miga, ... Genome research 30 (9), 1291-1305, 2020 | 515 | 2020 |
| Genomic insights into the Ixodes scapularis tick vector of Lyme disease M Gulia-Nuss, AB Nuss, JM Meyer, DE Sonenshine, RM Roe, ... Nature communications 7 (1), 10507, 2016 | 496 | 2016 |
| De novo assembly of haplotype-resolved genomes with trio binning S Koren, A Rhie, BP Walenz, AT Dilthey, DM Bickhart, SB Kingan, ... Nature biotechnology 36 (12), 1174-1182, 2018 | 395 | 2018 |
| Nanoliter reactors improve multiple displacement amplification of genomes from single cells Y Marcy, T Ishoey, RS Lasken, TB Stockwell, BP Walenz, AL Halpern, ... PLoS genetics 3 (9), e155, 2007 | 378 | 2007 |
