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Normalization and noise reduction for single cell RNA-seq experiments B Ding, L Zheng, Y Zhu, N Li, H Jia, R Ai, A Wildberg, W Wang Bioinformatics 31 (13), 2225-2227, 2015 | 117 | 2015 |
Assessing characteristics of RNA amplification methods for single cell RNA sequencing HR Dueck, R Ai, A Camarena, B Ding, R Dominguez, OV Evgrafov, ... BMC genomics 17, 1-22, 2016 | 40 | 2016 |
Identification of DNA motifs that regulate DNA methylation M Wang, K Zhang, V Ngo, C Liu, S Fan, JW Whitaker, Y Chen, R Ai, ... Nucleic Acids Research 47 (13), 6753-6768, 2019 | 35 | 2019 |
Parallel characterization of cis-regulatory elements for multiple genes using CRISPRpath X Ren, M Wang, B Li, K Jamieson, L Zheng, IR Jones, B Li, MA Takagi, ... Science advances 7 (38), eabi4360, 2021 | 19 | 2021 |
Systems-biology analysis of rheumatoid arthritis fibroblast-like synoviocytes implicates cell line-specific transcription factor function RI Ainsworth, D Hammaker, G Nygaard, C Ansalone, C Machado, ... Nature communications 13 (1), 6221, 2022 | 14 | 2022 |
Assessment of single cell RNA-seq normalization methods B Ding, L Zheng, W Wang G3: Genes, Genomes, Genetics 7 (7), 2039-2045, 2017 | 14 | 2017 |
Synthesis and in vitro evaluation of ambrisentan analogues as potential endothelin receptor antagonists J Xia, J Song, L Zhen, X Zhang, X Lei, L Zheng, Q Wang, H Sun Bioorganic & medicinal chemistry letters 21 (13), 3894-3897, 2011 | 12 | 2011 |
Noncoding loci without epigenomic signals can be essential for maintaining global chromatin organization and cell viability B Ding, Y Liu, Z Liu, L Zheng, P Xu, Z Chen, P Wu, Y Zhao, Q Pan, Y Guo, ... Science Advances 7 (45), eabi6020, 2021 | 8 | 2021 |
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Regulation associated modules reflect 3D genome modularity associated with chromatin activity L Zheng, W Wang Nature Communications 13 (1), 5281, 2022 | 1 | 2022 |
Regulatory elements can be essential for maintaining broad chromatin organization and cell viability Y Liu, B Ding, L Zheng, P Xu, Z Liu, Z Chen, P Wu, Y Zhao, Q Pan, Y Guo, ... Nucleic Acids Research 50 (8), 4340-4354, 2022 | 1 | 2022 |
Assessing the measurement transfer function of single-cell RNA sequencing HR Dueck, R Ai, A Camarena, B Ding, R Dominguez, OV Evgrafov, ... bioRxiv, 045450, 2016 | 1 | 2016 |
Functional characterization of gene regulatory elements and neuropsychiatric disease-associated risk loci in iPSCs and iPSC-derived neurons X Yang, IR Jones, PB Chen, H Yang, X Ren, L Zheng, B Li, YE Li, Q Sun, ... bioRxiv, 2023.08. 30.555359, 2023 | | 2023 |
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Rheumatoid Arthritis Patient-Specific Therapeutic Target Identification Using Integrative Epigenetic Profiling R Ainsworth 2018 ACR/ARHP Annual Meeting, 2018 | | 2018 |
Targeted mutations on 3D hub loci alter spatial interaction environment B Ding, L Zheng, D Medovoy, W Wang bioRxiv, 030999, 2015 | | 2015 |