| Strelka2: fast and accurate calling of germline and somatic variants S Kim, K Scheffler, AL Halpern, MA Bekritsky, E Noh, M Källberg, X Chen, ... Nature methods 15 (8), 591-594, 2018 | 1350 | 2018 |
| A reference data set of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree MA Eberle, E Fritzilas, P Krusche, M Källberg, BL Moore, MA Bekritsky, ... Genome research 27 (1), 157-164, 2017 | 414 | 2017 |
| Best practices for benchmarking germline small-variant calls in human genomes P Krusche, L Trigg, PC Boutros, CE Mason, FM De La Vega, BL Moore, ... Nature biotechnology 37 (5), 555-560, 2019 | 372 | 2019 |
| ExpansionHunter: a sequence-graph-based tool to analyze variation in short tandem repeat regions E Dolzhenko, V Deshpande, F Schlesinger, P Krusche, R Petrovski, ... Bioinformatics 35 (22), 4754-4756, 2019 | 290 | 2019 |
| Phase locking and multiple oscillating attractors for the coupled mammalian clock and cell cycle C Feillet, P Krusche, F Tamanini, RC Janssens, MJ Downey, P Martin, ... Proceedings of the National Academy of Sciences 111 (27), 9828-9833, 2014 | 246 | 2014 |
| Paragraph: a graph-based structural variant genotyper for short-read sequence data S Chen, P Krusche, E Dolzhenko, RM Sherman, R Petrovski, ... Genome biology 20, 1-13, 2019 | 161 | 2019 |
| Conserved noncoding sequences highlight shared components of regulatory networks in dicotyledonous plants L Baxter, A Jironkin, R Hickman, J Moore, C Barrington, P Krusche, ... The Plant Cell 24 (10), 3949-3965, 2012 | 85 | 2012 |
| Cyclin-dependent kinase inhibitor p20 controls circadian cell-cycle timing R Laranjeiro, TK Tamai, E Peyric, P Krusche, S Ott, D Whitmore Proceedings of the National Academy of Sciences 110 (17), 6835-6840, 2013 | 72 | 2013 |
| Genomic plasticity and rapid host switching can promote the evolution of generalism: a case study in the zoonotic pathogen Campylobacter DJ Woodcock, P Krusche, NJC Strachan, KJ Forbes, FM Cohan, G Méric, ... Scientific Reports 7 (1), 9650, 2017 | 40 | 2017 |
| Evolutionary analysis of regulatory sequences (EARS) in plants E Picot, P Krusche, A Tiskin, I Carré, S Ott The Plant Journal 64 (1), 165-176, 2010 | 37 | 2010 |
| Efficient longest common subsequence computation using bulk-synchronous parallelism P Krusche, A Tiskin International Conference on Computational Science and Its Applications, 165-174, 2006 | 29 | 2006 |
| New algorithms for efficient parallel string comparison P Krusche, A Tiskin Proceedings of the twenty-second annual ACM symposium on Parallelism in …, 2010 | 27 | 2010 |
| Advancing data science in drug development through an innovative computational framework for data sharing and statistical analysis AM Mallon, DA Häring, F Dahlke, P Aarden, S Afyouni, D Delbarre, ... BMC Medical Research Methodology 21, 1-11, 2021 | 17 | 2021 |
| Parallel longest increasing subsequences in scalable time and memory P Krusche, A Tiskin International Conference on Parallel Processing and Applied Mathematics, 176-185, 2009 | 13 | 2009 |
| Experimental evaluation of BSP programming libraries P Krusche Parallel Processing Letters 18 (01), 7-21, 2008 | 12 | 2008 |
| Multi-modal conditional gan: Data synthesis in the medical domain JD Ziegler, S Subramaniam, M Azzarito, O Doyle, P Krusche, T Coroller NeurIPS 2022 workshop on synthetic data for empowering ML research, 2022 | 11 | 2022 |
| Efficient parallel string comparison P Krusche, A Tiskin Proceedings of ParCo 38, 193-200, 2008 | 9 | 2008 |
| Computing alignment plots efficiently P Krusche, A Tiskin Parallel Computing: From Multicores and GPU's to Petascale, 158-165, 2010 | 8 | 2010 |
| Analysis of 5’gene regions reveals extraordinary conservation of novel non-coding sequences in a wide range of animals NJ Davies, P Krusche, E Tauber, S Ott BMC Evolutionary Biology 15, 1-13, 2015 | 7 | 2015 |
| Methodology for good machine learning with multi‐omics data T Coroller, B Sahiner, A Amatya, A Gossmann, K Karagiannis, C Moloney, ... Clinical Pharmacology & Therapeutics 115 (4), 745-757, 2024 | 6 | 2024 |
