| EcoCyc: fusing model organism databases with systems biology IM Keseler, A Mackie, M Peralta-Gil, A Santos-Zavaleta, S Gama-Castro, ... Nucleic acids research 41 (D1), D605-D612, 2013 | 700 | 2013 |
| RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation S Gama-Castro, V Jiménez-Jacinto, M Peralta-Gil, A Santos-Zavaleta, ... Nucleic acids research 36 (suppl_1), D120-D124, 2008 | 611 | 2008 |
| The EcoCyc database: reflecting new knowledge about Escherichia coli K-12 IM Keseler, A Mackie, A Santos-Zavaleta, R Billington, ... Nucleic acids research 45 (D1), D543-D550, 2017 | 601 | 2017 |
| EcoCyc: a comprehensive database of Escherichia coli biology IM Keseler, J Collado-Vides, A Santos-Zavaleta, M Peralta-Gil, ... Nucleic acids research 39 (suppl_1), D583-D590, 2010 | 584 | 2010 |
| RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond S Gama-Castro, H Salgado, A Santos-Zavaleta, D Ledezma-Tejeida, ... Nucleic acids research 44 (D1), D133-D143, 2016 | 504 | 2016 |
| RegulonDB v8. 0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more H Salgado, M Peralta-Gil, S Gama-Castro, A Santos-Zavaleta, ... Nucleic acids research 41 (D1), D203-D213, 2013 | 504 | 2013 |
| RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units) S Gama-Castro, H Salgado, M Peralta-Gil, A Santos-Zavaleta, ... Nucleic acids research 39 (suppl_1), D98-D105, 2010 | 457 | 2010 |
| RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12 A Santos-Zavaleta, H Salgado, S Gama-Castro, M Sánchez-Pérez, ... Nucleic acids research 47 (D1), D212-D220, 2019 | 307 | 2019 |
| The ecocyc database PD Karp, WK Ong, S Paley, R Billington, R Caspi, C Fulcher, A Kothari, ... EcoSal Plus 8 (1), 2018 | 143 | 2018 |
| The EcoCyc database in 2021 IM Keseler, S Gama-Castro, A Mackie, R Billington, C Bonavides-Martínez, ... Frontiers in microbiology 12, 711077, 2021 | 73 | 2021 |
| RegulonDB version 7.0: transcriptional regulation of S Gama-Castro, H Salgado, M Peralta-Gil, A Santos-Zavaleta, ... Escherichia coli, 98-105, 0 | 38 | |
| Bioinformatics resources for the study of gene regulation in bacteria J Collado-Vides, H Salgado, E Morett, S Gama-Castro, V Jiménez-Jacinto, ... Journal of bacteriology 191 (1), 23-31, 2009 | 36 | 2009 |
| RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12 VH Tierrafría, C Rioualen, H Salgado, P Lara, S Gama-Castro, P Lally, ... Microbial Genomics 8 (5), 000833, 2022 | 24 | 2022 |
| Extracting Regulatory Networks of Escherichia coli from RegulonDB H Salgado, I Martínez-Flores, A López-Fuentes, JS García-Sotelo, ... Bacterial Molecular Networks: Methods and Protocols, 179-195, 2012 | 17 | 2012 |
| Strategies towards digital and semi-automated curation in RegulonDB F Rinaldi, O Lithgow, S Gama-Castro, H Solano, A López-Fuentes, ... Database 2017, 2017 | 14 | 2017 |
| First steps in automatic summarization of transcription factor properties for RegulonDB: classification of sentences about structural domains and regulated processes CF Méndez-Cruz, S Gama-Castro, C Mejía-Almonte, MP Castillo-Villalba, ... Database 2017, 2017 | 9 | 2017 |
| EcoCyc: a comprehensive database of Escherichia coli biology. Nucleic Acids Res39: D583–D590 IM Keseler, J Collado-Vides, A Santos-Zavaleta, M Peralta-Gil, ... | 3 | 2011 |
| Sensory systems and transcriptional regulation in escherichia coli G Femerling, S Gama-Castro, P Lara, D Ledezma-Tejeida, VH Tierrafría, ... Frontiers in Bioengineering and Biotechnology 10, 108, 2022 | 2 | 2022 |
| RegulonDB v 10.5: tackling challenges to unif y classic and high throughput knowledge of gene regulation in A Santos-Zavaleta, H Salgado, S Gama-Castro, M Sánchez-Pérez, ... E. coli, 0 | 2 | |
| The EcoCyc Database (2023) PD Karp, S Paley, R Caspi, A Kothari, M Krummenacker, PE Midford, ... EcoSal Plus, eesp-0002-2023, 2023 | | 2023 |
