David R Kelley

Citirano

	Sve	Od 2018.
Citati	20129	11728
H-indeks	29	27
i10-indeks	37	37

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Suautori

John RinnUniversity of Colorado (CU Boulder)Potvrđena adresa e-pošte na colorado.edu
Steven SalzbergBloomberg Distinguished Professor, Johns Hopkins UniversityPotvrđena adresa e-pošte na jhu.edu
Cole TrapnellAssistant Professor, University of WashingtonPotvrđena adresa e-pošte na uw.edu
Loyal A. GoffJohns Hopkins Institute of Genetic MedicinePotvrđena adresa e-pošte na jhmi.edu
David Gillis HendricksonPotvrđena adresa e-pošte na calicolabs.com
Geo PerteaData/Software Engineer, Lieber Institute for Brain DevelopmentPotvrđena adresa e-pošte na jhu.edu
Michael C. SchatzBloomberg Distinguished Professor, Johns Hopkins UniversityPotvrđena adresa e-pošte na cs.jhu.edu
Lior PachterBren Professor of Computational Biology, CaltechPotvrđena adresa e-pošte na caltech.edu
Adam RobertsGoogle BrainPotvrđena adresa e-pošte na google.com
Daehwan KimMichael L. Rosenberg Assistant Professor of Bioinformatics at the University of Texas SouthwesternPotvrđena adresa e-pošte na UTSouthwestern.edu
James YorkeDist. Univ. Research Prof of Math and Physics, Univ. of MarylandPotvrđena adresa e-pošte na umd.edu
Aleksey V ZiminAssociate Research Scientist, Department of Biomedical Engineering, Johns Hopkins UnviersityPotvrđena adresa e-pošte na jhu.edu
Martin SauvageauAssistant Professor, Montreal Clinical Research Institute - IRCMPotvrđena adresa e-pošte na ircm.qc.ca
Ezgi HacisuleymanPostdoctoral fellow at Rockefeller UniversityPotvrđena adresa e-pošte na mail.rockefeller.edu
Mihai PopProfessor of Computer Science, University of Maryland, College ParkPotvrđena adresa e-pošte na umd.edu
Daniel D SommerNational Biodefense Analysis and Countermeasures CenterPotvrđena adresa e-pošte na nbacc.dhs.gov
Carl KingsfordProfessor, Computational Biology Department, School of Computer Science, CarnegiePotvrđena adresa e-pošte na cs.cmu.edu
Bo LiuEngineering Manager of Data Infrastructure, Square

Prati

David R Kelley

Calico Labs

Potvrđena adresa e-pošte na calicolabs.com - Početna stranica

Computational Biology


Naslov Poredaj po navodima Poredaj po godini Poredaj po naslovu	Citirano Citirano	Godina
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks C Trapnell, A Roberts, L Goff, G Pertea, D Kim, DR Kelley, H Pimentel, ... Nature Protocols 7 (3), 562-578, 2012	11850	2012
A whole-genome assembly of the domestic cow, Bos taurus AV Zimin, AL Delcher, L Florea, DR Kelley, MC Schatz, D Puiu, ... Genome biology 10 (4), 1-10, 2009	1293	2009
Basset: learning the regulatory code of the accessible genome with deep convolutional neural networks DR Kelley, J Snoek, JL Rinn Genome research 26 (7), 990-999, 2016	825	2016
Quake: quality-aware detection and correction of sequencing errors DR Kelley, MC Schatz, SL Salzberg Genome Biology 11 (11), R116, 2010	699	2010
Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre E Hacisuleyman, LA Goff, C Trapnell, A Williams, J Henao-Mejia, L Sun, ... Nature structural & molecular biology 21 (2), 198-206, 2014	636	2014
Assemblathon 1: A competitive assessment of de novo short read assembly methods DA Earl, K Bradnam, JS John, A Darling, D Lin, J Faas, HOK Yu, B Vince, ... Genome Research, 2011	601	2011
Transposable elements reveal a stem cell specific class of long noncoding RNAs DR Kelley, JL Rinn Genome Biology 13 (11), R107, 2012	538	2012
Long noncoding RNAs regulate adipogenesis L Sun, LA Goff, C Trapnell, R Alexander, KA Lo, E Hacisuleyman, ... Proceedings of the National Academy of Sciences 110 (9), 3387-3392, 2013	455	2013
Transcriptional and epigenetic dynamics during specification of human embryonic stem cells CA Gifford, MJ Ziller, H Gu, C Trapnell, J Donaghey, A Tsankov, ... Cell 153 (5), 1149-1163, 2013	449	2013
Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A SL Salzberg, DD Sommer, MC Schatz, AM Phillippy, PD Rabinowicz, ... BMC genomics 9 (1), 1-16, 2008	400	2008
CummeRbund: visualization and exploration of Cufflinks high-throughput sequencing data LA Goff, C Trapnell, D Kelley R package version 2 (0), 2012	290	2012
Sequential regulatory activity prediction across chromosomes with convolutional neural networks DR Kelley, YA Reshef, M Bileschi, D Belanger, CY McLean, J Snoek Genome research 28 (5), 739-750, 2018	289	2018
Effective gene expression prediction from sequence by integrating long-range interactions Ž Avsec, V Agarwal, D Visentin, JR Ledsam, A Grabska-Barwinska, ... Nature methods 18 (10), 1196-1203, 2021	209	2021
Widespread RNA binding by chromatin-associated proteins D G Hendrickson, DR Kelley, D Tenen, B Bernstein, JL Rinn Genome biology 17 (1), 1-18, 2016	187	2016
Gene prediction with Glimmer for metagenomic sequences augmented by classification and clustering DR Kelley, B Liu, AL Delcher, M Pop, SL Salzberg Nucleic Acids Research 40 (1), e9-e9, 2012	183	2012
Clustering metagenomic sequences with interpolated Markov models D Kelley, S Salzberg BMC Bioinformatics 11 (1), 544, 2010	138	2010
Genetic determinants and epigenetic effects of pioneer-factor occupancy J Donaghey, S Thakurela, J Charlton, JS Chen, ZD Smith, H Gu, R Pop, ... Nature genetics 50 (2), 250-258, 2018	129	2018
Predicting 3D genome folding from DNA sequence with Akita G Fudenberg, DR Kelley, KS Pollard Nature Methods 17 (11), 1111-1117, 2020	97	2020
Transposable elements modulate human RNA abundance and splicing via specific RNA-protein interactions DR Kelley, DG Hendrickson, D Tenen, JL Rinn Genome Biology 15 (12), 537, 2014	93	2014
Detection and correction of false segmental duplications caused by genome mis-assembly DR Kelley, SL Salzberg Genome Biology 11 (3), R28, 2010	89	2010

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