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Bhushan Bonde
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GSMN-TB: a web-based genome-scale network model of Mycobacterium tuberculosismetabolism
DJV Beste, T Hooper, G Stewart, B Bonde, C Avignone-Rossa, ...
Genome biology 8, 1-18, 2007
2562007
The genetic requirements for fast and slow growth in mycobacteria
DJV Beste, M Espasa, B Bonde, AM Kierzek, GR Stewart, J McFadden
PloS one 4 (4), e5349, 2009
1832009
13C Metabolic Flux Analysis Identifies an Unusual Route for Pyruvate Dissimilation in Mycobacteria which Requires Isocitrate Lyase and Carbon Dioxide Fixation
DJV Beste, B Bonde, N Hawkins, JL Ward, MH Beale, S Noack, K Nöh, ...
PLoS pathogens 7 (7), e1002091, 2011
1442011
The application of next-generation sequencing technologies to drug discovery and development
PM Woollard, NAL Mehta, JJ Vamathevan, S Van Horn, BK Bonde, ...
Drug discovery today 16 (11-12), 512-519, 2011
782011
Challenges to be faced in the reconstruction of metabolic networks from public databases
MG Poolman, BK Bonde, A Gevorgyan, HH Patel, DA Fell
IEE Proceedings-Systems Biology 153 (5), 379-384, 2006
782006
Transcriptomic analysis identifies growth rate modulation as a component of the adaptation of mycobacteria to survival inside the macrophage
DJV Beste, E Laing, B Bonde, C Avignone-Rossa, ME Bushell, ...
Journal of bacteriology 189 (11), 3969-3976, 2007
672007
Selection of objective function in genome scale flux balance analysis for process feed development in antibiotic production
C Khannapho, H Zhao, BK Bonde, AM Kierzek, CA Avignone-Rossa, ...
Metabolic engineering 10 (5), 227-233, 2008
542008
Network analysis has diverse roles in drug discovery
S Hasan, BK Bonde, NS Buchan, MD Hall
Drug discovery today 17 (15-16), 869-874, 2012
532012
Microwave accelerated selective and facile deprotection of allyl esters catalyzed by Montmorillonite K-10
AS Gajare, NS Shaikh, BK Bonde, VH Deshpande
Journal of the Chemical Society, Perkin Transactions 1, 639-640, 2000
342000
Differential Producibility Analysis (DPA) of Transcriptomic Data with Metabolic Networks: Deconstructing the Metabolic Response of M. tuberculosis
BK Bonde, DJV Beste, E Laing, AM Kierzek, J McFadden
PLOS Computational Biology 7 (6), e1002060, 2011
272011
The Future of Drug Development with Quantum Computing
B Bonde, P Patil, B Choubey
High Performance Computing for Drug Discovery and Biomedicine, 153-179, 2023
162023
GSMN-ML- a genome scale metabolic network reconstruction of the obligate human pathogen Mycobacterium leprae
K Borah, JL Kearney, R Banerjee, P Vats, H Wu, S Dahale, ...
PLoS Neglected Tropical Diseases 14 (7), e0007871, 2020
142020
Nö h, K., Kruger, NJ, Ratcliffe, RG, and McFadden, J.(2011). 13C metabolic flux analysis identifies an unusual route for pyruvate dissimilation in mycobacteria which requires …
DJV Beste, B Bonde, N Hawkins, JL Ward, MH Beale, S Noack
PLoS Pathog 7, e1002091, 0
6
RNASeq_similarity_matrix: visually identify sample mix-ups in RNASeq data using a ‘genomic’sequence similarity matrix
NC Kist, RA Power, A Skelton, SD Seegobin, M Verbelen, B Bonde, ...
Bioinformatics 36 (6), 1940-1941, 2020
32020
Metabolism and bioinformatics: the relationship between metabolism and genome structure
B Bonde
Oxford Brookes University, 2006
22006
Edge, Fog, and Cloud Against Disease: The Potential of High-Performance Cloud Computing for Pharma Drug Discovery
B Bonde
High Performance Computing for Drug Discovery and Biomedicine, 181-202, 2023
12023
Harnessing AI for Enhanced Cybersecurity: Trends, Challenges, and Future Prospects
P Patil, P Thealla, B Bonde
Corporate Cybersecurity in the Aviation, Tourism, and Hospitality Sector …, 2024
2024
review of “Downstream functional analysis of an ‘omics’ experiment using freely available tools” written by Simon Cockell
B Bonde
The Bioinformatics Knowledgeblog, 2011
2011
Differential Producibility Analysis (DPA) of transcriptomic data to help understand metabolic status of a cell or microorganism
B Bonde
The Bioinformatics Knowledgeblog, 2011
2011
The substructure of large metabolic networks
DA Fell, B Bonde, MG Poolman
FEBS JOURNAL 272, 433-433, 2005
2005
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Articles 1–20