Prati
Christian Otto
Christian Otto
ecSeq Bioinformatics
Potvrđena adresa e-pošte na bioinf.uni-leipzig.de
Naslov
Citirano
Citirano
Godina
Fast mapping of short sequences with mismatches, insertions and deletions using index structures
S Hoffmann, C Otto, S Kurtz, CM Sharma, P Khaitovich, J Vogel, ...
PLoS computational biology 5 (9), e1000502, 2009
6342009
Metilene: fast and sensitive calling of differentially methylated regions from bisulfite sequencing data
F Jühling, H Kretzmer, SH Bernhart, C Otto, PF Stadler, S Hoffmann
Genome research 26 (2), 256-262, 2016
2992016
A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection
S Hoffmann, C Otto, G Doose, A Tanzer, D Langenberger, S Christ, ...
Genome biology 15, 1-11, 2014
2862014
DNA methylome analysis in Burkitt and follicular lymphomas identifies differentially methylated regions linked to somatic mutation and transcriptional control
H Kretzmer, SH Bernhart, W Wang, A Haake, MA Weniger, AK Bergmann, ...
Nature genetics 47 (11), 1316-1325, 2015
1422015
Evolution of the let-7 microRNA Family
J Hertel, S Bartschat, A Wintsche, C Otto, PF Stadler
RNA biology 9 (3), 231-241, 2012
1292012
Lacking alignments? The next-generation sequencing mapper segemehl revisited
C Otto, PF Stadler, S Hoffmann
Bioinformatics 30 (13), 1837-1843, 2014
1262014
Fast and sensitive mapping of bisulfite-treated sequencing data
C Otto, PF Stadler, S Hoffmann
Bioinformatics 28 (13), 1698-1704, 2012
752012
Novel modes of RNA editing in mitochondria
S Moreira, M Valach, M Aoulad-Aissa, C Otto, G Burger
Nucleic Acids Research 44 (10), 4907-4919, 2016
602016
Cell cycle, oncogenic and tumor suppressor pathways regulate numerous long and macro non-protein-coding RNAs
J Hackermüller, K Reiche, C Otto, N Hösler, C Blumert, K Brocke-Heidrich, ...
Genome biology 15, 1-23, 2014
532014
A first Glimpse at the genome of the Baikalian amphipod Eulimnogammarus verrucosus
L Rivarola‐Duarte, C Otto, F Jühling, S Schreiber, D Bedulina, L Jakob, ...
Journal of Experimental Zoology Part B: Molecular and Developmental …, 2014
342014
Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods
P Drozdova, L Rivarola-Duarte, D Bedulina, D Axenov-Gribanov, ...
BMC genomics 20, 1-14, 2019
212019
Fast local fragment chaining using sum-of-pair gap costs.
C Otto, S Hoffmann, J Gorodkin, PF Stadler
Algorithms for Molecular Biology 6, 4, 2011
212011
Detection of differentially expressed segments in tiling array data
C Otto, K Reiche, J Hackermüller
Bioinformatics 28 (11), 1471-1479, 2012
162012
BAT: Bisulfite Analysis Toolkit: BAT is a toolkit to analyze DNA methylation sequencing data accurately and reproducibly. It covers standard processing and analysis steps from …
H Kretzmer, C Otto, S Hoffmann
F1000Research 6, 2017
142017
Transcriptome-level effects of the model organic pollutant phenanthrene and its solvent acetone in three amphipod species
Z Shatilina, P Drozdova, D Bedulina, L Rivarola-Duarte, S Schreiber, ...
Comparative Biochemistry and Physiology Part D: Genomics and Proteomics 33 …, 2020
62020
BAT: BISULFITE ANALYSIS TOOLKIT
S HOFFMANN, H KRETZMER, C OTTO
F1000RESEARCH 6, 1490, 2017
2017
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