| Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission S Karthikeyan, JI Levy, P De Hoff, G Humphrey, A Birmingham, K Jepsen, ... Nature 609 (7925), 101-108, 2022 | 372 | 2022 |
| The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2 JE Pekar, A Magee, E Parker, N Moshiri, K Izhikevich, JL Havens, ... Science 377 (6609), 960-966, 2022 | 266 | 2022 |
| Sustained human outbreak of a new MPXV clade I lineage in eastern Democratic Republic of the Congo EH Vakaniaki, C Kacita, E Kinganda-Lusamaki, Á O’toole, ... Nature medicine 30 (10), 2791-2795, 2024 | 181 | 2024 |
| Incomplete genetic reconstitution of B cell pools contributes to prolonged immunosuppression after measles VN Petrova, B Sawatsky, AX Han, BM Laksono, L Walz, E Parker, ... Science immunology 4 (41), eaay6125, 2019 | 167 | 2019 |
| Phylogenetic clustering by linear integer programming (PhyCLIP) AX Han, E Parker, F Scholer, S Maurer-Stroh, CA Russell Molecular Biology and Evolution 36 (7), 1580-1595, 2019 | 70 | 2019 |
| Clinical presentation, disease course and outcome of COVID-19 in hospitalized patients with and without pre-existing cardiac disease–a cohort study across eighteen countries CAPACITY-COVID Collaborative Consortium and LEOSS Study Group, ... MedRxiv, 2021.03. 11.21253106, 2021 | 54 | 2021 |
| Asynchrony between virus diversity and antibody selection limits influenza virus evolution DH Morris, VN Petrova, FW Rossine, E Parker, BT Grenfell, RA Neher, ... Elife 9, e62105, 2020 | 45 | 2020 |
| SARS-CoV-2 emergence very likely resulted from at least two zoonotic events JE Pekar, A Magee, E Parker, N Moshiri, K Izhikevich, JL Havens, ... Zenodo, 2022 | 41 | 2022 |
| SARS-CoV-2 diagnostic testing rates determine the sensitivity of genomic surveillance programs AX Han, A Toporowski, JA Sacks, MD Perkins, S Briand, M Van Kerkhove, ... Nature Genetics 55 (1), 26-33, 2023 | 31 | 2023 |
| Inferring putative transmission clusters with Phydelity AX Han, E Parker, S Maurer-Stroh, CA Russell Virus evolution 5 (2), vez039, 2019 | 26 | 2019 |
| Outbreak severity of highly pathogenic avian influenza A(H5N8) viruses is inversely correlated to polymerase complex activity and interferon induction D Vigeveno, RM. Poen, MJ. Parker, E. Holwerda, M. De Haan, K. Van Montfort ... Journal of Virology, 2020 | 20* | 2020 |
| Emergence and spread of two SARS-CoV-2 variants of interest in Nigeria IB Olawoye, PE Oluniyi, JU Oguzie, JN Uwanibe, TA Kayode, TJ Olumade, ... Nature communications 14 (1), 811, 2023 | 17 | 2023 |
| Regional connectivity drove bidirectional transmission of SARS-CoV-2 in the Middle East during travel restrictions E Parker, C Anderson, M Zeller, A Tibi, JL Havens, G Laroche, M Benlarbi, ... Nature communications 13 (1), 4784, 2022 | 13 | 2022 |
| Association between early life antibiotic use and childhood overweight and obesity: a narrative review U Partap, SH Allcock, E Parker, D Gurdasani, EH Young, MS Sandhu Global health, epidemiology and genomics 3, e18, 2018 | 13 | 2018 |
| Hepatitis C virus transmission among men who have sex with men in amsterdam: external introductions may complicate microelimination efforts J Koopsen, E Parker, AX Han, T van de Laar, C Russell, E Hoornenborg, ... Clinical Infectious Diseases 72 (12), e1056-e1063, 2021 | 11* | 2021 |
| Introduction and establishment of SARS-CoV-2 Gamma variant in New York City in early 2021 TI Vasylyeva, CE Fang, M Su, JL Havens, E Parker, JC Wang, M Zeller, ... The Journal of Infectious Diseases 226 (12), 2142-2149, 2022 | 9 | 2022 |
| Genomic surveillance reveals dynamic shifts in the connectivity of COVID-19 epidemics NL Matteson, GW Hassler, E Kurzban, MA Schwab, SA Perkins, ... Cell 186 (26), 5690-5704. e20, 2023 | 8 | 2023 |
| Low testing rates limit the ability of genomic surveillance programs to monitor SARS-CoV-2 variants: a mathematical modelling study AX Han, A Toporowski, JA Sacks, M Perkins, S Briand, M Van Kerkhove, ... medRxiv, 2022.05. 20.22275319, 2022 | 8 | 2022 |
| Genomic epidemiology uncovers the timing and origin of the emergence of mpox in humans E Parker, IF Omah, P Varilly, A Magee, AO Ayinla, AE Sijuwola, MI Ahmed, ... medRxiv, 2024 | 7 | 2024 |
| Genetic and antigenic characterization of influenza A/H5N1 viruses isolated from patients in Indonesia, 2008–2015 HA Pawestri, AA Nugraha, AX Han, E Pratiwi, E Parker, M Richard, ... Virus Genes 56, 417-429, 2020 | 7 | 2020 |
