Bringing Molecular Dynamics Simulation Data into View PW Hildebrand, AS Rose, JKS Tiemann Trends in biochemical sciences, 2019 | 233 | 2019 |
Structural insights into the process of GPCR-G protein complex formation X Liu, X Xu, D Hilger, P Aschauer, JKS Tiemann, Y Du, H Liu, K Hirata, ... Cell 177 (5), 1243-1251. e12, 2019 | 168 | 2019 |
GPCRmd uncovers the dynamics of the 3D-GPCRome I Rodríguez-Espigares, M Torrens-Fontanals, JKS Tiemann, ... Nature Methods 17 (8), 777-787, 2020 | 150 | 2020 |
GPCR-SSFE 2.0—a fragment-based molecular modeling web tool for Class A G-protein coupled receptors CL Worth, F Kreuchwig, JKS Tiemann, A Kreuchwig, M Ritschel, ... Nucleic acids research 45 (W1), W408-W415, 2017 | 44 | 2017 |
MDsrv: viewing and sharing molecular dynamics simulations on the web JKS Tiemann, R Guixà-González, PW Hildebrand, AS Rose Nature Methods 14 (12), 1123, 2017 | 41 | 2017 |
Sharing Data from Molecular Simulations M Abraham, R Apostolov, J Barnoud, P Bauer, C Blau, AMJJ Bonvin, ... Journal of chemical information and modeling 59 (10), 4093-4099, 2019 | 39 | 2019 |
SL2: an interactive webtool for modeling of missing segments in proteins J Ismer, AS Rose, JKS Tiemann, A Goede, R Preissner, PW Hildebrand Nucleic acids research 44 (W1), W390-W394, 2016 | 33 | 2016 |
HomolWat: a web server tool to incorporate ‘homologous’ water molecules into GPCR structures E Mayol, A García-Recio, JKS Tiemann, PW Hildebrand, ... Nucleic acids research 48 (W1), W54-W59, 2020 | 27 | 2020 |
The European Research Network on Signal Transduction (ERNEST): Toward a Multidimensional Holistic Understanding of G Protein-Coupled Receptor Signaling ME Sommer, J Selent, J Carlsson, C De Graaf, DE Gloriam, GM Keseru, ... ACS Pharmacology & Translational Science, 2020 | 24 | 2020 |
MDverse, shedding light on the dark matter of molecular dynamics simulations JKS Tiemann, M Szczuka, L Bouarroudj, M Oussaren, S Garcia, ... Elife 12, RP90061, 2024 | 22 | 2024 |
Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks J Koehler Leman, S Lyskov, SM Lewis, J Adolf-Bryfogle, RF Alford, ... Nature communications 12 (1), 6947, 2021 | 18 | 2021 |
Interpreting the molecular mechanisms of disease variants in human transmembrane proteins JKS Tiemann, H Zschach, K Lindorff-Larsen, A Stein Biophysical Journal 122 (11), 2176-2191, 2023 | 13 | 2023 |
MDsrv: visual sharing and analysis of molecular dynamics simulations M Kampfrath, R Staritzbichler, GP Hernández, AS Rose, JKS Tiemann, ... Nucleic Acids Research 50 (W1), W483-W489, 2022 | 9 | 2022 |
MutationExplorer: a webserver for mutation of proteins and 3D visualization of energetic impacts M Philipp, CW Moth, N Ristic, JKS Tiemann, F Seufert, A Panfilova, ... Nucleic Acids Research, gkae301, 2024 | 7 | 2024 |
Mechanistic insights into G-protein coupling with an agonist-bound G-protein-coupled receptor H Batebi, G Pérez-Hernández, SN Rahman, B Lan, A Kamprad, M Shi, ... Nature structural & molecular biology, 1-10, 2024 | 6 | 2024 |
Voronoia4RNA—a database of atomic packing densities of RNA structures and their complexes J Ismer, AS Rose, JKS Tiemann, A Goede, K Rother, PW Hildebrand Nucleic acids research 41 (D1), D280-D284, 2012 | 5 | 2012 |
A fragment based method for modeling of protein segments into cryo-EM density maps J Ismer, AS Rose, JKS Tiemann, PW Hildebrand BMC Bioinformatics 18 (1), 475, 2017 | 2 | 2017 |
FragFit: a web-application for interactive modeling of protein segments into cryo-EM density maps JKS Tiemann, AS Rose, J Ismer, MD Darvish, T Hilal, CMT Spahn, ... Nucleic Acids Research, 2018 | 1 | 2018 |
Mechanistic insights into G protein association with a G protein-coupled receptor H Batebi, G Pérez-Hernández, J Mathiesen, M Shi, JKS Tiemann, ... | | 2023 |
Interpreting the molecular mechanisms of disease variants in human transmembrane proteins JKS Tiemann, H Zschach, K Lindorff-Larsen, A Stein BioRxiv, 2022.07. 12.499731, 2022 | | 2022 |