Prati
John Vant
John Vant
Postdoctoral Research Associate, Oak Ridge National Lab
Potvrđena adresa e-pošte na ornl.gov
Naslov
Citirano
Citirano
Godina
ChAdOx1 interacts with CAR and PF4 with implications for thrombosis with thrombocytopenia syndrome
AT Baker, RJ Boyd, D Sarkar, A Teijeira-Crespo, CK Chan, E Bates, ...
Science Advances 7 (49), eabl8213, 2021
1392021
Atoms to Phenotypes: Molecular Design Principles of Cellular Energy Metabolism
A Singharoy, C Maffeo, KH Delgado-Magnero, DJK Swainsbury, M Sener, ...
Cell 179 (5), 1098-1111. e23, 2019
1292019
CryoFold: Determining protein structures and data-guided ensembles from cryo-EM density maps
M Shekhar, G Terashi, C Gupta, D Sarkar, G Debussche, NJ Sisco, ...
Matter 4 (10), 3195-3216, 2021
34*2021
Flexible Fitting of Small Molecules into Electron Microscopy Maps Using Molecular Dynamics Simulations with Neural Network Potentials
JW Vant, SLJ Lahey, K Jana, M Shekhar, D Sarkar, BH Munk, ...
Journal of chemical information and modeling 60 (5), 2591-2604, 2020
262020
Data-guided Multi-Map variables for ensemble refinement of molecular movies
JW Vant, D Sarkar, E Streitwieser, G Fiorin, R Skeel, JV Vermaas, ...
The Journal of Chemical Physics 153 (21), 2020
132020
Exploring cryo-electron microscopy with molecular dynamics
JW Vant, D Sarkar, J Nguyen, AT Baker, JV Vermaas, A Singharoy
Biochemical Society Transactions 50 (1), 569-581, 2022
102022
Energy landscape of the SARS-CoV-2 reveals extensive conformational heterogeneity
G Mashayekhi, J Vant, A Polavarapu, A Ourmazd, A Singharoy
Current research in structural biology 4, 68-77, 2022
82022
ChAdOx1 interacts with CAR and PF4 with implications for thrombosis with thrombocytopenia syndrome. Sci. Adv. 7, eabl8213
AT Baker, RJ Boyd, D Sarkar, A Teijeira-Crespo, CK Chan, E Bates, ...
52021
Large-Scale Molecular Dynamics Simulations of Cellular Compartments
E Wilson, J Vant, J Layton, R Boyd, H Lee, M Turilli, B Hernández, ...
Structure and Function of Membrane Proteins, 335-356, 2021
42021
Scalable Adaptive Protein Ensemble Refinement Integrating Flexible Fitting
D Sarkar, H Lee, JW Vant, M Turilli, S Jha, A Singharoy
bioRxiv, 2021
2*2021
Analysis of the rotationally-resolved infrared spectrum of CD379Br and CD381Br between 900 and 1400 cm− 1
T Masiello, JW Vant, CS Brauer, TA Blake
Journal of Molecular Spectroscopy 393, 111760, 2023
12023
Learning Free Energy Pathways through Reinforcement Learning of Adaptive Steered Molecular Dynamics
N Ho, JK Cava, J Vant, A Shukla, J Miratsky, P Turaga, R Maciejewski, ...
bioRxiv, 2022.10. 04.510845, 2022
12022
The high-resolution infrared analysis of the ν3 and ν6 bands of CD3Br
T Masiello, S Ray, JW Vant, CS Brauer, TA Blake
Journal of Molecular Spectroscopy 376, 111405, 2021
12021
Poor Person’s pH Simulation of Membrane Proteins
C Gupta, U Khaniya, JW Vant, M Shekhar, J Mao, MR Gunner, ...
Computational Design of Membrane Proteins, 197-217, 2021
12021
Mind reading of the proteins: Deep-learning to forecast molecular dynamics
C Gupta, JK Cava, D Sarkar, E Wilson, J Vant, S Murray, A Singharoy, ...
bioRxiv, 2020.07. 28.225490, 2020
12020
Molecular Dynamics Flexible Fitting: All You Want to Know About Resolution Exchange
JW Vant, D Sarkar, C Gupta, MS Shekhar, S Mittal, A Singharoy
Protein Structure Prediction, 301-315, 2020
12020
CryoFold: determining protein structures and ensembles from cryo-EM data
M Shekhar, G Terashi, C Gupta, D Sarkar, G Debussche, NJ Sisco, ...
12019
Structural mechanism of HP1α-dependent transcriptional repression and chromatin compaction
V Sokolova, J Miratsky, V Svetlov, M Brenowitz, J Vant, T Lewis, K Dryden, ...
bioRxiv, 2023
2023
Structural mechanism of HP1α-dependent transcriptional repression and chromatin compaction
V Sokolova, J Miratsky, V Svetlov, M Brenowitz, J Vant, T Lewis, K Dryden, ...
Biorxiv, 2023
2023
Functional Organization of Glycolytic Metabolon on Mitochondria
H Wang, J Vant, Y Wu, R Sanchez, ML Micou, A Zhang, V Luczak, SB Yu, ...
bioRxiv, 2023
2023
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