| The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes R Overbeek, T Begley, RM Butler, JV Choudhuri, HY Chuang, M Cohoon, ... Nucleic acids research 33 (17), 5691-5702, 2005 | 2349 | 2005 |
| Network‐based classification of breast cancer metastasis HY Chuang, E Lee, YT Liu, D Lee, T Ideker Molecular systems biology 3 (1), 140, 2007 | 1811 | 2007 |
| Inferring pathway activity toward precise disease classification E Lee, HY Chuang, JW Kim, T Ideker, D Lee PLoS computational biology 4 (11), e1000217, 2008 | 673 | 2008 |
| A decade of systems biology HY Chuang, M Hofree, T Ideker Annual review of cell and developmental biology 26 (1), 721-744, 2010 | 443 | 2010 |
| A reference data set of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree MA Eberle, E Fritzilas, P Krusche, M Källberg, BL Moore, MA Bekritsky, ... Genome research 27 (1), 157-164, 2017 | 414 | 2017 |
| Isaac: Ultra-fast whole genome secondary analysis on Illumina sequencing platforms C Raczy, R Petrovski, CT Saunders, I Chorny, S Kruglyak, EH Margulies, ... Bioinformatics 29 (16), 2041-2043, 2013 | 375 | 2013 |
| ROR1 is expressed in human breast cancer and associated with enhanced tumor-cell growth S Zhang, L Chen, B Cui, HY Chuang, J Yu, J Wang-Rodriguez, L Tang, ... PloS one 7 (3), e31127, 2012 | 302 | 2012 |
| Protein networks markedly improve prediction of subcellular localization in multiple eukaryotic species KY Lee, HY Chuang, A Beyer, MK Sung, WK Huh, B Lee, T Ideker Nucleic acids research 36 (20), e136-e136, 2008 | 105 | 2008 |
| Whole genome haplotyping by dilution, amplification and sequencing F Kaper, S Swamy, B Klotzle, S Muchel, J Cottrell, M Bibikova, ... Proceedings of the National Academy of Sciences 110 (14), 5552-5557, 2013 | 102 | 2013 |
| Subnetwork-based analysis of chronic lymphocytic leukemia identifies pathways that associate with disease progression HY Chuang, L Rassenti, M Salcedo, K Licon, A Kohlmann, T Haferlach, ... Blood, The Journal of the American Society of Hematology 120 (13), 2639-2649, 2012 | 95 | 2012 |
| B-cell activating factor and v-Myc myelocytomatosis viral oncogene homolog (c-Myc) influence progression of chronic lymphocytic leukemia W Zhang, AP Kater, GF Widhopf, HY Chuang, T Enzler, DF James, ... Proceedings of the National Academy of Sciences 107 (44), 18956-18960, 2010 | 90 | 2010 |
| Pisces: an accurate and versatile variant caller for somatic and germline next-generation sequencing data T Dunn, G Berry, D Emig-Agius, Y Jiang, S Lei, A Iyer, N Udar, ... Bioinformatics 35 (9), 1579-1581, 2019 | 78 | 2019 |
| Chronic lymphocytic leukemia of Eμ-TCL1 transgenic mice undergoes rapid cell turnover that can be offset by extrinsic CD257 to accelerate disease progression T Enzler, AP Kater, W Zhang, GF Widhopf, HY Chuang, J Lee, E Avery, ... Blood, The Journal of the American Society of Hematology 114 (20), 4469-4476, 2009 | 69 | 2009 |
| Proteome-wide discovery of mislocated proteins in cancer KY Lee, K Byun, W Hong, HY Chuang, CG Pack, E Bayarsaikhan, ... Genome research 23 (8), 1283-1294, 2013 | 62 | 2013 |
| Development and validation of an ultradeep next-generation sequencing assay for testing of plasma cell-free DNA from patients with advanced cancer F Janku, S Zhang, J Waters, L Liu, HJ Huang, V Subbiah, DS Hong, ... Clinical Cancer Research 23 (18), 5648-5656, 2017 | 53 | 2017 |
| Biomarkers for Diagnosis and Treatment of Chronic Lymphocytic Leukemia TJ Kipps, Z Shen, SP Briggs, T Ideker, L Rassenti, HY Chuang US Patent App. 13/058,530, 2011 | 40 | 2011 |
| Identifying significant genes from microarray data HY Chuang, H Liu, S Brown, C McMunn-Coffran, CY Kao, DF Hsu Proceedings. Fourth IEEE Symposium on Bioinformatics and Bioengineering, 358-365, 2004 | 38 | 2004 |
| Methods and systems for generation and error-correction of unique molecular index sets with heterogeneous molecular lengths K Wu, C Zhao, HY Chuang, A So, S Tanner, SM Gross US Patent 10,844,429, 2020 | 32 | 2020 |
| Open-access Synthetic Spike-in mRNA-seq data for Cancer Gene Fusions WD Tembe, SJ Pond, C Legendre, HY Chuang, WS Liang, NE Kim, ... BMC Genomics 2014 (15), 824, 2014 | 28 | 2014 |
| Short Paper_ H CHUANG, HK TSAI, YFAN TSAI, CYAN KAO Journal of information science and engineering 19, 953-966, 2003 | 28* | 2003 |
Trey IdekerUniversity of California San DiegoVerified email at ucsd.edu
