Brett G. Olivier

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B TeusinkProfessor of systems Biology, AIMMS, VU AmsterdanVerified email at vu.nl
Frank J BruggemanProfessor, VU UniversityVerified email at vu.nl
Snoep JLStellenbosch University; Manchester University; Vrije Universiteit AmsterdamVerified email at sun.ac.za
Dagmar WaltemathProfessor of Medical InformaticsVerified email at uni-greifswald.de
Michael HuckaGoogle Quantum AIVerified email at google.com
Frank T. BergmannBioQUANT/COS, Heidelberg University, Heidelberg, GermanyVerified email at caltech.edu
Johann RohwerStellenbosch UniversityVerified email at sun.ac.za
Jan-Hendrik HofmeyrStellenbosch UniversityVerified email at sun.ac.za
Sarah KeatingUCLVerified email at ucl.ac.uk
Sven SahleUniversität HeidelbergVerified email at bioquant.uni-heidelberg.de
David Phillip NickersonAuckland Bioengineering Institute, University of AucklandVerified email at auckland.ac.nz
Stefan HoopsResearch Associate Professor, Biocomplexity Institute & Initiative, University of VirginiaVerified email at virginia.edu
Darren WilkinsonProfessor of Statistics, Durham University, U.K.Verified email at durham.ac.uk
Douwe MolenaarVrije Universiteit AmsterdamVerified email at vu.nl
Timo MaarleveldCentrum Wiskunde InformaticaVerified email at cwi.nl
Nicolas RodriguezSenior Software Systems and Database Architect, Babraham InstituteVerified email at babraham.ac.uk
Dr. Matthias KönigHumboldt-University BerlinVerified email at hu-berlin.de
Hans WesterhoffUniversity of Amsterdam, VU University Amsterdam, University of ManchesterVerified email at manchester.ac.uk
Leen StougieSenior Researcher CWI, Prof. of Operations Research Vrije Universiteit, AmsterdamVerified email at cwi.nl
Herbert M SauroUniversity of WashingtonVerified email at u.washington.edu

Brett G. Olivier

Vrije Universiteit Amsterdam

Verified email at vu.nl - Homepage

Research Data Stewardship Software Engineering Systems Biology Software and Standards


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Web-based kinetic modelling using JWS Online BG Olivier, JL Snoep Bioinformatics 20 (13), 2143-2144, 2004	413	2004
MEMOTE for standardized genome-scale metabolic model testing C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ... Nature biotechnology 38 (3), 272-276, 2020	381	2020
Modelling cellular systems with PySCeS BG Olivier, JM Rohwer, JHS Hofmeyr Bioinformatics 21 (4), 560-561, 2005	246	2005
Community flux balance analysis for microbial consortia at balanced growth RA Khandelwal, BG Olivier, WFM Röling, B Teusink, FJ Bruggeman PloS one 8 (5), e64567, 2013	240	2013
SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular systems biology 16 (8), e9110, 2020	229	2020
A systematic assessment of current genome-scale metabolic reconstruction tools SN Mendoza, BG Olivier, D Molenaar, B Teusink Genome biology 20, 1-20, 2019	225	2019
Towards building the silicon cell: a modular approach JL Snoep, F Bruggeman, BG Olivier, HV Westerhoff Biosystems 83 (2-3), 207-216, 2006	169	2006
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project FT Bergmann, R Adams, S Moodie, J Cooper, M Glont, M Golebiewski, ... BMC bioinformatics 15, 1-9, 2014	161	2014
FAME, the flux analysis and modeling environment J Boele, BG Olivier, B Teusink BMC systems biology 6, 1-5, 2012	116	2012
The systems biology markup language (SBML): language specification for level 3 version 2 core release 2 M Hucka, FT Bergmann, C Chaouiya, A Dräger, S Hoops, SM Keating, ... Journal of integrative bioinformatics 16 (2), 20190021, 2019	109	2019
Constraint-based stoichiometric modelling from single organisms to microbial communities W Gottstein, BG Olivier, FJ Bruggeman, B Teusink Journal of the Royal Society Interface 13 (124), 20160627, 2016	108	2016
StochPy: a comprehensive, user-friendly tool for simulating stochastic biological processes TR Maarleveld, BG Olivier, FJ Bruggeman PloS one 8 (11), e79345, 2013	103	2013
Optimal flux spaces of genome-scale stoichiometric models are determined by a few subnetworks SM Kelk, BG Olivier, L Stougie, FJ Bruggeman Scientific reports 2 (1), 580, 2012	100	2012
The systems biology markup language (SBML): language specification for level 3 version 2 core M Hucka, FT Bergmann, A Dräger, S Hoops, SM Keating, N Le Novère, ... Journal of integrative bioinformatics 15 (1), 20170081, 2018	99	2018
Basic concepts and principles of stoichiometric modeling of metabolic networks TR Maarleveld, RA Khandelwal, BG Olivier, B Teusink, FJ Bruggeman Biotechnology journal 8 (9), 997-1008, 2013	93	2013
Systems modeling approaches for microbial community studies: from metagenomics to inference of the community structure M Hanemaaijer, WFM Röling, BG Olivier, RA Khandelwal, B Teusink, ... Frontiers in microbiology 6, 213, 2015	91	2015
The systems biology markup language (SBML): Language specification for level 3 version 1 core L Smith, D Wilkinson, M Hucka, F Bergmann, S Hoops, S Keating, S Sahle, ... Nature Precedings, 1-1, 2010	79	2010
Harmonizing semantic annotations for computational models in biology ML Neal, M König, D Nickerson, G Mısırlı, R Kalbasi, A Dräger, K Atalag, ... Briefings in bioinformatics 20 (2), 540-550, 2019	72	2019
SBML level 3 package: flux balance constraints version 2 BG Olivier, FT Bergmann Journal of integrative bioinformatics 15 (1), 20170082, 2018	69	2018
Memote: A community driven effort towards a standardized genome-scale metabolic model test suite C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ... BioRxiv, 350991, 2018	59	2018

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