| Analysis of copy number variations among diverse cattle breeds GE Liu, Y Hou, B Zhu, MF Cardone, L Jiang, A Cellamare, A Mitra, ... Genome research 20 (5), 693-703, 2010 | 345 | 2010 |
| KRAB-zinc finger protein gene expansion in response to active retrotransposons in the murine lineage G Wolf, A de Iaco, MA Sun, M Bruno, M Tinkham, D Hoang, A Mitra, ... Elife 9, e56337, 2020 | 99 | 2020 |
| Circular RNAs and competing endogenous RNA (ceRNA) networks A Mitra, K Pfeifer, KS Park Translational cancer research 7 (Suppl 5), S624, 2018 | 79 | 2018 |
| Combgap contributes to recruitment of Polycomb group proteins in Drosophila P Ray, S De, A Mitra, K Bezstarosti, JAA Demmers, K Pfeifer, JA Kassis Proceedings of the National Academy of Sciences 113 (14), 3826-3831, 2016 | 62 | 2016 |
| Enhancer–promoter interactions can bypass CTCF-mediated boundaries and contribute to phenotypic robustness S Chakraborty, N Kopitchinski, Z Zuo, A Eraso, P Awasthi, R Chari, A Mitra, ... Nature genetics 55 (2), 280-290, 2023 | 49 | 2023 |
| Formation of a polycomb-domain in the absence of strong polycomb response elements S De, A Mitra, Y Cheng, K Pfeifer, JA Kassis PLoS genetics 12 (7), e1006200, 2016 | 47 | 2016 |
| Body condition scoring for adult zebrafish (Danio rerio) TS Clark, LM Pandolfo, CM Marshall, AK Mitra, JM Schech Journal of the American Association for Laboratory Animal Science 57 (6 …, 2018 | 46 | 2018 |
| Genome-wide copy number variant analysis in inbred chickens lines with different susceptibility to Marek’s disease J Luo, Y Yu, A Mitra, S Chang, H Zhang, G Liu, N Yang, J Song G3: Genes| Genomes| Genetics 3 (2), 217-223, 2013 | 43 | 2013 |
| CD5 dynamically calibrates basal NF-κB signaling in T cells during thymic development and peripheral activation CA Matson, S Choi, F Livak, B Zhao, A Mitra, PE Love, NJ Singh Proceedings of the National Academy of Sciences 117 (25), 14342-14353, 2020 | 42 | 2020 |
| Temporal transcriptome changes induced by MDV in Marek's disease-resistant and-susceptible inbred chickens Y Yu, J Luo, A Mitra, S Chang, F Tian, H Zhang, P Yuan, H Zhou, J Song BMC genomics 12, 1-12, 2011 | 41 | 2011 |
| Histone methylation analysis and pathway predictions in chickens after MDV infection J Luo, A Mitra, F Tian, S Chang, H Zhang, K Cui, Y Yu, K Zhao, J Song Public Library of Science 7 (7), e41849, 2012 | 35 | 2012 |
| Somatic SMAD3-activating mutations cause melorheostosis by up-regulating the TGF-β/SMAD pathway H Kang, S Jha, A Ivovic, N Fratzl-Zelman, Z Deng, A Mitra, WA Cabral, ... Journal of Experimental Medicine 217 (5), 2020 | 34 | 2020 |
| Loss of imprinting mutations define both distinct and overlapping roles for misexpression of IGF2 and of H19 lncRNA KS Park, A Mitra, B Rahat, K Kim, K Pfeifer Nucleic Acids Research 45 (22), 12766-12779, 2017 | 32 | 2017 |
| Linkage-specific deubiquitylation by OTUD5 defines an embryonic pathway intolerant to genomic variation DB Beck, MA Basar, AJ Asmar, JJ Thompson, H Oda, DT Uehara, K Saida, ... Science advances 7 (4), eabe2116, 2021 | 30 | 2021 |
| Functional genomic analysis of variation on beef tenderness induced by acute stress in Angus cattle C Zhao, F Tian, Y Yu, J Luo, A Mitra, F Zhan, Y Hou, G Liu, L Zan, ... International Journal of Genomics 2012 (1), 756284, 2012 | 28 | 2012 |
| Instabilities in single-species and host-parasite systems: Period-doubling bifurcations and chaos JC Misra, A Mitra Computers & Mathematics with Applications 52 (3), 525-538, 2006 | 28 | 2006 |
| Extensive co-binding and rapid redistribution of NANOG and GATA6 during emergence of divergent lineages JJ Thompson, DJ Lee, A Mitra, S Frail, RK Dale, PP Rocha Nature Communications 13 (1), 4257, 2022 | 27 | 2022 |
| Marek’s disease virus infection induces widespread differential chromatin marks in inbred chicken lines A Mitra, J Luo, H Zhang, K Cui, K Zhao, J Song BMC genomics 13, 1-12, 2012 | 27 | 2012 |
| Genome-wide bovine H3K27me3 modifications and the regulatory effects on genes expressions in peripheral blood lymphocytes Y He, Y Yu, Y Zhang, J Song, A Mitra, Y Zhang, Y Wang, D Sun, S Zhang PloS one 7 (6), e39094, 2012 | 27 | 2012 |
| Histone modifications induced by MDV infection at early cytolytic and latency phases A Mitra, J Luo, Y He, Y Gu, H Zhang, K Zhao, K Cui, J Song BMC genomics 16, 1-12, 2015 | 22 | 2015 |
