Prati
John W. Whitaker
John W. Whitaker
Senior Director of Bioinformatics, DermTech, San Diego
Potvrđena adresa e-pošte na dermtech.com - Početna stranica
Naslov
Citirano
Citirano
Godina
Integrative analysis of 111 reference human epigenomes
Nature 518 (7539), 317-330, 2015
5929*2015
Expanded encyclopaedias of DNA elements in the human and mouse genomes
JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ...
Nature 583 (7818), 699-710, 2020
11362020
Epigenomic analysis of multilineage differentiation of human embryonic stem cells
W Xie, MD Schultz, R Lister, Z Hou, N Rajagopal, P Ray, JW Whitaker, ...
Cell 153 (5), 1134-1148, 2013
7712013
Human body epigenome maps reveal noncanonical DNA methylation variation
MD Schultz, Y He, JW Whitaker, M Hariharan, EA Mukamel, D Leung, ...
Nature 523 (7559), 212–216, 2015
6542015
DNA methylome signature in rheumatoid arthritis
K Nakano, JW Whitaker, DL Boyle, W Wang, GS Firestein
Annals of the rheumatic diseases 72 (1), 110-117, 2013
3752013
Predicting enhancer transcription and activity from chromatin modifications
Y Zhu, L Sun, Z Chen, JW Whitaker, T Wang, W Wang
Nucleic acids research 41 (22), 10032-10043, 2013
1602013
Comprehensive epigenetic landscape of rheumatoid arthritis fibroblast-like synoviocytes
R Ai, T Laragione, D Hammaker, DL Boyle, A Wildberg, K Maeshima, ...
Nature communications 9 (1), 1921, 2018
1582018
Constructing 3D interaction maps from 1D epigenomes
Y Zhu, Z Chen, K Zhang, M Wang, D Medovoy, JW Whitaker, B Ding, N Li, ...
Nature communications 7, 10812, 2016
1472016
Predicting the human epigenome from DNA motifs
JW Whitaker, Z Chen, W Wang
Nature methods 12, 265–272, 2014
1402014
An imprinted rheumatoid arthritis methylome signature reflects pathogenic phenotype
JW Whitaker, R Shoemaker, DL Boyle, J Hillman, D Anderson, W Wang, ...
Genome Medicine 5 (4), 40, 2013
1112013
Perspectives on ENCODE
MP Snyder, TR Gingeras, JE Moore, Z Weng, MB Gerstein, B Ren, ...
Nature 583 (7818), 693-698, 2020
892020
DNA Methylome Signature in Synoviocytes From Patients With Early Rheumatoid Arthritis Compared to Synoviocytes From Patients With Longstanding Rheumatoid Arthritis
R Ai, JW Whitaker, DL Boyle, PP Tak, DM Gerlag, W Wang, GS Firestein
Arthritis & Rheumatology 67 (7), 1978–1980, 2015
86*2015
The transferome of metabolic genes explored: analysis of the horizontal transfer of enzyme encoding genes in unicellular eukaryotes
JW Whitaker, GA McConkey, DR Westhead
Genome biology 10 (4), R36, 2009
792009
Integrative genomic deconvolution of rheumatoid arthritis GWAS loci into gene and cell type associations
AM Walsh, JW Whitaker, CC Huang, Y Cherkas, SL Lamberth, ...
Genome biology 17, 1-16, 2016
772016
The Rheumatoid Arthritis Risk Gene LBH Regulates Growth in Fibroblast‐like Synoviocytes
AKH Ekwall, JW Whitaker, D Hammaker, WD Bugbee, W Wang, ...
Arthritis & rheumatology 67 (5), 1193-1202, 2015
632015
Integrative omics analysis of rheumatoid arthritis identifies non-obvious therapeutic targets
JW Whitaker, DL Boyle, B Bartok, ST Ball, S Gay, W Wang, GS Firestein
PLoS ONE 10 (4), e0124254, 2015
562015
Abnormal PTPN11 enhancer methylation promotes rheumatoid arthritis fibroblast-like synoviocyte aggressiveness and joint inflammation
K Maeshima, SM Stanford, D Hammaker, C Sacchetti, L Zeng, R Ai, ...
JCI insight 1 (7), 2016
532016
Limb Bud and Heart Development Gene Transcription is Regulated by the Interplay of an Enhancer Risk Allele and DNA Methylation in Rheumatoid Arthritis
D Hammaker, JW Whitaker, K Maeshima, DL Boyle, AKH Ekwall, W Wang, ...
Arthritis & Rheumatology 68, 2637–2645, 2016
48*2016
metaTIGER: a metabolic evolution resource
JW Whitaker, I Letunic, GA McConkey, DR Westhead
Nucleic acids research 37 (suppl 1), D531-D538, 2009
482009
Epigenomic analysis reveals DNA motifs regulating histone modifications in human and mouse
V Ngo, Z Chen, K Zhang, JW Whitaker, M Wang, W Wang
Proceedings of the National Academy of Sciences 116 (9), 3668-3677, 2019
402019
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