Prati
Cinzia Pizzi
Cinzia Pizzi
Associate Professor of Computer Engineering, Dept. of Information Engineering, University of Padova
Potvrđena adresa e-pošte na dei.unipd.it
Naslov
Citirano
Citirano
Godina
MOODS: fast search for position weight matrix matches in DNA sequences
J Korhonen, P Martinmäki, C Pizzi, P Rastas, E Ukkonen
Bioinformatics 25 (23), 3181-3182, 2009
1802009
MetaProb: accurate metagenomic reads binning based on probabilistic sequence signatures
S Girotto, C Pizzi, M Comin
Bioinformatics 32 (17), i567-i575, 2016
712016
Finding significant matches of position weight matrices in linear time
C Pizzi, P Rastas, E Ukkonen
IEEE/ACM Transactions on Computational Biology and Bioinformatics 8 (1), 69-79, 2009
402009
A multistep bioinformatic approach detects putative regulatory elements in gene promoters
S Bortoluzzi, A Coppe, A Bisognin, C Pizzi, GA Danieli
BMC bioinformatics 6, 1-15, 2005
292005
MissMax: alignment-free sequence comparison with mismatches through filtering and heuristics
C Pizzi
Algorithms for Molecular Biology 11, 1-10, 2016
272016
Sequence similarity measures based on bounded hamming distance
A Apostolico, C Guerra, GM Landau, C Pizzi
Theoretical Computer Science 638, 76-90, 2016
272016
Fast profile matching algorithms—A survey
C Pizzi, E Ukkonen
Theoretical Computer Science 395 (2-3), 137-157, 2008
272008
Comparison of microbiome samples: methods and computational challenges
M Comin, B Di Camillo, C Pizzi, F Vandin
Briefings in bioinformatics 22 (1), 88-95, 2021
222021
Fast search algorithms for position specific scoring matrices
C Pizzi, P Rastas, E Ukkonen
International Conference on Bioinformatics Research and Development, 239-250, 2007
202007
Irredundant tandem motifs
L Parida, C Pizzi, SE Rombo
Theoretical Computer Science 525, 89-102, 2014
182014
Metagenomic reads binning with spaced seeds
S Girotto, M Comin, C Pizzi
Theoretical Computer Science 698, 88-99, 2017
172017
Speedup for a periodic subgraph miner
A Apostolico, M Barbares, C Pizzi
Information Processing Letters 111 (11), 521-523, 2011
162011
Motif discovery by monotone scores
A Apostolico, C Pizzi
Discrete Applied Mathematics 155 (6-7), 695-706, 2007
162007
Efficient computation of spaced seed hashing with block indexing
S Girotto, M Comin, C Pizzi
BMC bioinformatics 19, 29-38, 2018
152018
Efficient algorithms for the discovery of gapped factors
A Apostolico, C Pizzi, E Ukkonen
Algorithms for Molecular Biology 6, 1-10, 2011
152011
Fast Approximation of Frequent k-Mers and Applications to Metagenomics
L Pellegrina, C Pizzi, F Vandin
Journal of Computational Biology 27 (4), 534-549, 2020
142020
Detecting seeded motifs in DNA sequences
C Pizzi, S Bortoluzzi, A Bisognin, A Coppe, GA Danieli
Nucleic Acids Research 33 (15), e135-e135, 2005
142005
Iterative Spaced Seed Hashing: Closing the Gap Between Spaced Seed Hashing and k-mer Hashing
E Petrucci, L Noé, C Pizzi, M Comin
Journal of Computational Biology 27 (2), 223-233, 2020
132020
Higher recall in metagenomic sequence classification exploiting overlapping reads
S Girotto, M Comin, C Pizzi
BMC genomics 18, 69-79, 2017
132017
Monotone scoring of patterns with mismatches
A Apostolico, C Pizzi
Algorithms in Bioinformatics: 4th International Workshop, WABI 2004, Bergen …, 2004
132004
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