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Oguz Selvitopi
Oguz Selvitopi
Verified email at lbl.gov - Homepage
Title
Cited by
Cited by
Year
Temporal workload-aware replicated partitioning for social networks
A Turk, RO Selvitopi, H Ferhatosmanoglu, C Aykanat
IEEE Transactions on Knowledge and Data Engineering 26 (11), 2832-2845, 2014
432014
Improving performance of sparse matrix dense matrix multiplication on large-scale parallel systems
S Acer, O Selvitopi, C Aykanat
Parallel Computing 59, 71-96, 2016
372016
Adept: a domain independent sequence alignment strategy for gpu architectures
MG Awan, J Deslippe, A Buluc, O Selvitopi, S Hofmeyr, L Oliker, K Yelick
BMC bioinformatics 21, 1-29, 2020
342020
Partitioning models for scaling parallel sparse matrix-matrix multiplication
K Akbudak, O Selvitopi, C Aykanat
ACM Transactions on Parallel Computing (TOPC) 4 (3), 1-34, 2018
342018
Locality-aware and load-balanced static task scheduling for MapReduce
O Selvitopi, GV Demirci, A Turk, C Aykanat
Future generation computer systems 90, 49-61, 2019
262019
A novel method for scaling iterative solvers: Avoiding latency overhead of parallel sparse-matrix vector multiplies
RO Selvitopi, MM Ozdal, C Aykanat
IEEE Transactions on parallel and distributed systems 26 (3), 632-645, 2014
252014
Distributed many-to-many protein sequence alignment using sparse matrices
O Selvitopi, S Ekanayake, G Guidi, GA Pavlopoulos, A Azad, A Buluç
SC20: International Conference for High Performance Computing, Networking …, 2020
242020
Combinatorial BLAS 2.0: Scaling combinatorial algorithms on distributed-memory systems
A Azad, O Selvitopi, MT Hussain, JR Gilbert, A Buluç
IEEE Transactions on Parallel and Distributed Systems 33 (4), 989-1001, 2021
232021
Replicated partitioning for undirected hypergraphs
RO Selvitopi, A Turk, C Aykanat
Journal of Parallel and Distributed Computing 72 (4), 547-563, 2012
222012
Fast shared-memory streaming multilevel graph partitioning
N Jafari, O Selvitopi, C Aykanat
Journal of Parallel and Distributed Computing 147, 140-151, 2021
212021
Unraveling the functional dark matter through global metagenomics
GA Pavlopoulos, FA Baltoumas, S Liu, O Selvitopi, AP Camargo, ...
Nature 622 (7983), 594-602, 2023
202023
Optimizing high performance Markov clustering for pre-exascale architectures
O Selvitopi, MT Hussain, A Azad, A Buluç
2020 IEEE International Parallel and Distributed Processing Symposium (IPDPS …, 2020
202020
The parallelism motifs of genomic data analysis
K Yelick, A Buluç, M Awan, A Azad, B Brock, R Egan, S Ekanayake, ...
Philosophical Transactions of the Royal Society A 378 (2166), 20190394, 2020
202020
A high-throughput solver for marginalized graph kernels on GPU
YH Tang, O Selvitopi, DT Popovici, A Buluç
2020 IEEE International Parallel and Distributed Processing Symposium (IPDPS …, 2020
152020
A recursive hypergraph bipartitioning framework for reducing bandwidth and latency costs simultaneously
O Selvitopi, S Acer, C Aykanat
IEEE Transactions on Parallel and Distributed Systems 28 (2), 345-358, 2016
152016
Distributed-memory parallel algorithms for sparse times tall-skinny-dense matrix multiplication
O Selvitopi, B Brock, I Nisa, A Tripathy, K Yelick, A Buluç
Proceedings of the ACM International Conference on Supercomputing, 431-442, 2021
132021
Parallel string graph construction and transitive reduction for de novo genome assembly
G Guidi, O Selvitopi, M Ellis, L Oliker, K Yelick, A Buluç
2021 IEEE International Parallel and Distributed Processing Symposium (IPDPS …, 2021
122021
Reducing latency cost in 2D sparse matrix partitioning models
O Selvitopi, C Aykanat
Parallel Computing 57, 1-24, 2016
122016
Communication-avoiding and memory-constrained sparse matrix-matrix multiplication at extreme scale
MT Hussain, O Selvitopi, A Buluç, A Azad
2021 IEEE International Parallel and Distributed Processing Symposium (IPDPS …, 2021
112021
Considerations for a distributed GraphBLAS API
B Brock, A Buluç, TG Mattson, S McMillan, JE Moreira, R Pearce, ...
2020 IEEE International Parallel and Distributed Processing Symposium …, 2020
102020
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