Mario L Arrieta-Ortiz
Mario L Arrieta-Ortiz
Institute for Systems Biology
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An experimentally supported model of the Bacillus subtilis global transcriptional regulatory network
ML Arrieta‐Ortiz, C Hafemeister, AR Bate, T Chu, A Greenfield, B Shuster, ...
Molecular systems biology 11 (11), 839, 2015
Genomes-based phylogeny of the genus Xanthomonas
LM Rodriguez-R, A Grajales, ML Arrieta-Ortiz, C Salazar, S Restrepo, ...
BMC microbiology 12, 1-14, 2012
In vivo commensal control of Clostridioides difficile virulence
BP Girinathan, N DiBenedetto, JN Worley, J Peltier, ML Arrieta-Ortiz, ...
Cell Host & Microbe 29 (11), 1693-1708. e7, 2021
Genome sequence of Xanthomonas fuscans subsp. fuscansstrain 4834-R reveals that flagellar motility is not a general feature of xanthomonads
A Darrasse, S Carrere, V Barbe, T Boureau, ML Arrieta-Ortiz, S Bonneau, ...
BMC genomics 14, 1-30, 2013
Path‐seq identifies an essential mycolate remodeling program for mycobacterial host adaptation
EJR Peterson, R Bailo, AC Rothchild, ML Arrieta‐Ortiz, A Kaur, M Pan, ...
Molecular systems biology 15 (3), e8584, 2019
Genomic Survey of Pathogenicity Determinants and VNTR Markers in the Cassava Bacterial Pathogen Xanthomonas axonopodis pv. Manihotis Strain CIO151
ML Arrieta-Ortiz, LM Rodríguez-R, AL Perez-Quintero, L Poulin, AC Díaz, ...
PloS one 8 (11), e79704, 2013
Mycobacterium abscessus biofilms produce an extracellular matrix and have a distinct mycolic acid profile
A Dokic, E Peterson, ML Arrieta-Ortiz, M Pan, A Di Maio, N Baliga, A Bhatt
The Cell Surface 7, 100051, 2021
Intricate Genetic Programs Controlling Dormancy in Mycobacterium tuberculosis
EJR Peterson*, AA Abidi*, ML Arrieta-Ortiz*, B Aguilar, JT Yurkovich, ...
Cell Reports 31 (4), 107577, 2020
Reconsidering the in vivo functions of Clostridial Stickland amino acid fermentations
A Pavao, M Graham, ML Arrieta-Ortiz, SRC Immanuel, NS Baliga, L Bry
Anaerobe 76, 102600, 2022
Genotet: An interactive web-based visual exploration framework to support validation of gene regulatory networks
B Yu, H Doraiswamy, X Chen, E Miraldi, ML Arrieta-Ortiz, C Hafemeister, ...
IEEE transactions on visualization and computer graphics 20 (12), 1903-1912, 2014
The type VI secretion system of Xanthomonas phaseoli pv. manihotis is involved in virulence and in vitro motility
NA Montenegro Benavides, A Alvarez B, ML Arrieta-Ortiz, ...
BMC microbiology 21, 1-12, 2021
Inference of bacterial small RNA regulatory networks and integration with transcription factor-driven regulatory networks
ML Arrieta-Ortiz, C Hafemeister, B Shuster, NS Baliga, R Bonneau, ...
Msystems 5 (3), 10.1128/msystems. 00057-20, 2020
Antibody-recruiting protein-catalyzed capture agents to combat antibiotic-resistant bacteria
MN Idso, AS Akhade, ML Arrieta-Ortiz, BT Lai, V Srinivas, JP Hopkins, ...
Chemical Science 11 (11), 3054-3067, 2020
Predictive regulatory and metabolic network models for systems analysis of Clostridioides difficile
ML Arrieta-Ortiz, SRC Immanuel, S Turkarslan, WJ Wu, BP Girinathan, ...
Cell host & microbe 29 (11), 1709-1723. e5, 2021
Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle
Y Wang, LA Gallagher, PA Andrade, A Liu, IR Humphreys, S Turkarslan, ...
Cell 186 (22), 4803-4817. e13, 2023
PerSort facilitates characterization and elimination of persister subpopulation in mycobacteria
V Srinivas, ML Arrieta-Ortiz, A Kaur, EJR Peterson, NS Baliga
Msystems 5 (6), 10.1128/msystems. 01127-20, 2020
Disrupting the ArcA regulatory network amplifies the fitness cost of tetracycline resistance in Escherichia coli
ML Arrieta-Ortiz, M Pan, A Kaur, E Pepper-Tunick, V Srinivas, A Dash, ...
Msystems 8 (1), e00904-22, 2023
Mathematical models to study the biology of pathogens and the infectious diseases they cause
JB Xavier, JM Monk, S Poudel, CJ Norsigian, AV Sastry, C Liao, J Bento, ...
Iscience 25 (4), 2022
MtrA modulates Mycobacterium tuberculosis cell division in host microenvironments to mediate intrinsic resistance and drug tolerance
EJR Peterson, AN Brooks, DJ Reiss, A Kaur, J Do, M Pan, WJ Wu, ...
Cell Reports 42 (8), 2023
Quantitative prediction of conditional vulnerabilities in regulatory and metabolic networks using PRIME
SRC Immanuel, ML Arrieta-Ortiz, RA Ruiz, M Pan, ...
npj Systems Biology and Applications 7 (1), 43, 2021
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