Interpretable embeddings from molecular simulations using Gaussian mixture variational autoencoders YB Varolgüneş, T Bereau, JF Rudzinski Machine Learning: Science and Technology 1 (1), 015012, 2020 | 51 | 2020 |
Unified modeling of familial Mediterranean fever and cryopyrin associated periodic syndromes Y Bozkurt, A Demir, B Erman, A Gül Computational and mathematical methods in medicine 2015, 2015 | 24 | 2015 |
ProteinAC: a frequency domain technique for analyzing protein dynamics YB Varolgunes, A Demir Physical biology 15 (2), 026009, 2018 | 6 | 2018 |
Unified modeling of Familial Mediterranean Fever and Cryopyrin Associated Periodic Syndromes A Gul, Y Bozkurt, A Demir, B Erman Pediatric Rheumatology 13 (1), 1-2, 2015 | 1 | 2015 |
Mathematical Modeling of Behcet's Disease: A Dynamical Systems Approach C Erdem, Y Bozkurt, B Erman, A Gül, A Demir Journal of Biological Systems 23 (02), 231-257, 2015 | 1 | 2015 |
Automated Identification of Collective Variables and Metastable States from Molecular Dynamics Data YB Varolgunes, T Bereau, JF Rudzinski Biophysical Journal 120 (3), 79a, 2021 | | 2021 |
Allostery in Proteins as Point-to-Point Telecommunication in a Network: Frequency Decomposed Signal-to-Noise Ratio and Channel Capacity Analysis Y Bozkurt Varolgunes, J Rudzinski, A Demir BiorXiv, 2021 | | 2021 |
Data Driven characterisation of the Free Energy Landscape of Syndiotatic Polysterene A Banerjee, Y Bozkurt Varolgünes, J Rudzinski, T Bereau APS March Meeting Abstracts 2021, B26. 009, 2021 | | 2021 |
Perturbation-Response and Noise Dynamics in Proteins and Representation Learning for Biomolecular Simulations Y Bozkurt Varolgunes Koc University, 2020 | | 2020 |