Gordon Blackshields
Gordon Blackshields
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Clustal W and Clustal X version 2.0
MA Larkin, G Blackshields, NP Brown, R Chenna, PA McGettigan, ...
bioinformatics 23 (21), 2947-2948, 2007
Multiple sequence alignments
IM Wallace, G Blackshields, DG Higgins
Current opinion in structural biology 15 (3), 261-266, 2005
Sequence embedding for fast construction of guide trees for multiple sequence alignment
G Blackshields, F Sievers, W Shi, A Wilm, DG Higgins
Algorithms for Molecular Biology 5, 1-11, 2010
Coevolution with bacteriophages drives genome-wide host evolution and constrains the acquisition of abiotic-beneficial mutations
PD Scanlan, AR Hall, G Blackshields, VP Friman, MR Davis Jr, ...
Molecular biology and evolution 32 (6), 1425-1435, 2015
Analysis and comparison of benchmarks for multiple sequence alignment
G Blackshields, IM Wallace, M Larkin, DG Higgins
In silico biology 6 (4), 321-339, 2006
A novel serum microRNA panel to discriminate benign from malignant ovarian disease
R Langhe, L Norris, FA Saadeh, G Blackshields, R Varley, A Harrison, ...
Cancer letters 356 (2), 628-636, 2015
Circular RNAs are differentially expressed in prostate cancer and are potentially associated with resistance to enzalutamide
J Greene, AM Baird, O Casey, L Brady, G Blackshields, M Lim, O o’Brien, ...
Scientific Reports 9 (1), 10739, 2019
Wal lace IM, Wilm A., Lopez R., Thompson JD, Gib son TJ, Higgins DG 2007. Clustal W and Clustal X version 2.0
MA Larkin, G Blackshields, NP Brown, R Chenna, PA McGettigan, ...
Bioinformatics 23 (21), 2947-2948, 0
Identifying novel hypoxia-associated markers of chemoresistance in ovarian cancer
LM McEvoy, SA O’Toole, CD Spillane, CM Martin, MF Gallagher, ...
BMC cancer 15, 1-13, 2015
& Thompson, JD (2007)
MA Larkin, G Blackshields, NP Brown, R Chenna, PA McGettigan, ...
Clustal W and Clustal X version 2, 2947-2948, 0
Evaluating established methods for rumen 16S rRNA amplicon sequencing with mock microbial populations
E McGovern, SM Waters, G Blackshields, MS McCabe
Frontiers in microbiology 9, 1365, 2018
Ligation of TLR7 on CD19+CD1dhi B cells suppresses allergic lung inflammation via regulatory T cells
AR Khan, S Amu, SP Saunders, E Hams, G Blackshields, MO Leonard, ...
European journal of immunology 45 (6), 1842-1854, 2015
Peripheral blood microRNA and VEGFA mRNA changes following electroconvulsive therapy: implications for psychotic depression
E Kolshus, KM Ryan, G Blackshields, P Smyth, O Sheils, DM McLoughlin
Acta Psychiatrica Scandinavica 136 (6), 594-606, 2017
Experimental challenge with bovine respiratory syncytial virus in dairy calves: bronchial lymph node transcriptome response
D Johnston, B Earley, MS McCabe, K Lemon, C Duffy, M McMenamy, ...
Scientific Reports 9 (1), 14736, 2019
The effect of breed and diet type on the global transcriptome of hepatic tissue in beef cattle divergent for feed efficiency
MG Higgins, DA Kenny, C Fitzsimons, G Blackshields, S Coyle, ...
BMC genomics 20, 1-11, 2019
Mind the gaps: progress in progressive alignment
DG Higgins, G Blackshields, IM Wallace
Proceedings of the National Academy of Sciences 102 (30), 10411-10412, 2005
Wallace. I
MA Larkin, G Blackshields, NP Brown, R Chenna, PA McGettigan, ...
M, Wilm, A., Lopez, R., Thompson, J. D., Gibson, TJ & Higgins, DG, 2947-2948, 2007
An integrated analysis of the SOX2 microRNA response program in human pluripotent and nullipotent stem cell lines
SF Vencken, P Sethupathy, G Blackshields, C Spillane, S Elbaruni, ...
BMC genomics 15, 1-16, 2014
Interleukin-15 is associated with disease severity in viral bronchiolitis
TR Leahy, R McManus, DG Doherty, R Grealy, T Coulter, P Smyth, ...
European Respiratory Journal 47 (1), 212-222, 2016
CD10−/ALDH− cells are the sole cisplatin-resistant component of a novel ovarian cancer stem cell hierarchy
B Ffrench, C Gasch, K Hokamp, C Spillane, G Blackshields, TM Mahgoub, ...
Cell Death & Disease 8 (10), e3128-e3128, 2017
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