Transposable element influences on gene expression in plants CD Hirsch, NM Springer Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1860 (1), 157-165, 2017 | 226 | 2017 |
Retrospective View of North American Potato (Solanum tuberosum L.) Breeding in the 20th and 21st Centuries CN Hirsch, CD Hirsch, K Felcher, J Coombs, D Zarka, A Van Deynze, ... G3: Genes, Genomes, Genetics 3 (6), 1003-1013, 2013 | 218 | 2013 |
RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome Q Li, JI Gent, G Zynda, J Song, I Makarevitch, CD Hirsch, CN Hirsch, ... Proceedings of the National Academy of Sciences 112 (47), 14728-14733, 2015 | 210 | 2015 |
Draft assembly of elite inbred line PH207 provides insights into genomic and transcriptome diversity in maize CN Hirsch, CD Hirsch, AB Brohammer, MJ Bowman, I Soifer, O Barad, ... The Plant Cell 28 (11), 2700-2714, 2016 | 194 | 2016 |
Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridisation F Li, NM Upadhyaya, J Sperschneider, O Matny, H Nguyen-Phuc, R Mago, ... Nature communications 10 (1), 5068, 2019 | 134 | 2019 |
Spud DB: A resource for mining sequences, genotypes, and phenotypes to accelerate potato breeding CD Hirsch, JP Hamilton, KL Childs, J Cepela, E Crisovan, B Vaillancourt, ... The Plant Genome 7 (1), plantgenome2013.12.0042, 2014 | 119 | 2014 |
Natural variation for gene expression responses to abiotic stress in maize AJ Waters, I Makarevitch, J Noshay, LT Burghardt, CN Hirsch, CD Hirsch, ... The Plant Journal 89 (4), 706-717, 2017 | 115 | 2017 |
Automatic evaluation of wheat resistance to fusarium head blight using dual mask-RCNN deep learning frameworks in computer vision WH Su, J Zhang, C Yang, R Page, T Szinyei, CD Hirsch, BJ Steffenson Remote sensing 13 (1), 26, 2020 | 101 | 2020 |
Transposable elements contribute to dynamic genome content in maize SN Anderson, MC Stitzer, AB Brohammer, P Zhou, JM Noshay, ... The Plant Journal 100 (5), 1052-1065, 2019 | 99 | 2019 |
Detection of fusarium head blight in wheat using a deep neural network and color imaging R Qiu, C Yang, A Moghimi, M Zhang, BJ Steffenson, CD Hirsch Remote Sensing 11 (22), 2658, 2019 | 99 | 2019 |
Organization and evolution of subtelomeric satellite repeats in the potato genome GA Torres, Z Gong, M Iovene, CD Hirsch, CR Buell, GJ Bryan, P Novák, ... G3: Genes| Genomes| Genetics 1 (2), 85-92, 2011 | 94 | 2011 |
Lineage-Specific Adaptive Evolution of the Centromeric Protein CENH3 in Diploid and Allotetraploid Oryza Species CD Hirsch, Y Wu, H Yan, J Jiang Molecular biology and evolution 26 (12), 2877-2885, 2009 | 64 | 2009 |
De Novo Assembly and Phasing of Dikaryotic Genomes from Two Isolates of Puccinia coronata f. sp. avenae, the Causal Agent of Oat Crown Rust ME Miller, Y Zhang, V Omidvar, J Sperschneider, B Schwessinger, ... MBio 9 (1), 10.1128/mbio. 01650-17, 2018 | 59 | 2018 |
Classifying cold‐stress responses of inbred maize seedlings using RGB imaging TA Enders, S St. Dennis, J Oakland, ST Callen, MA Gehan, ND Miller, ... Plant Direct 3 (1), e00104, 2019 | 50 | 2019 |
Genomic limitations to RNA sequencing expression profiling CD Hirsch, NM Springer, CN Hirsch The Plant Journal 84 (3), 491-503, 2015 | 46 | 2015 |
Reduced representation approaches to interrogate genome diversity in large repetitive plant genomes CD Hirsch, J Evans, CR Buell, CN Hirsch Briefings in functional genomics 13 (4), 257-267, 2014 | 46 | 2014 |
Hyperspectral imaging and improved feature variable selection for automated determination of deoxynivalenol in various genetic lines of barley kernels for resistance screening WH Su, C Yang, Y Dong, R Johnson, R Page, T Szinyei, CD Hirsch, ... Food Chemistry 343, 128507, 2021 | 45 | 2021 |
Dynamic patterns of transcript abundance of transposable element families in maize SN Anderson, MC Stitzer, P Zhou, J Ross-Ibarra, CD Hirsch, NM Springer G3: Genes, Genomes, Genetics 9 (11), 3673-3682, 2019 | 38 | 2019 |
Towards Improved Molecular Identification Tools in Fine Fescue (Festuca L., Poaceae) Turfgrasses: Nuclear Genome Size, Ploidy, and Chloroplast Genome … Y Qiu, CD Hirsch, Y Yang, E Watkins Frontiers in Genetics 10, 1223, 2019 | 24 | 2019 |
Conservation and purifying selection of transcribed genes located in a rice centromere C Fan, JG Walling, J Zhang, CD Hirsch, J Jiang, RA Wing The Plant Cell 23 (8), 2821-2830, 2011 | 23 | 2011 |