Nicholas Bokulich

Citirano

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Suautori

David A. MillsDistinguished Professor; Peter J. Shields Endowed Chair; University of California-DavisPotvrđena adresa e-pošte na ucdavis.edu
J Gregory CaporasoNorthern Arizona UniversityPotvrđena adresa e-pošte na nau.edu
Rob KnightWolfe Family Chair at Rady Children's; Director, Center for Microbiome Innovation; Professor, UCSDPotvrđena adresa e-pošte na ucsd.edu
Evan BolyenSenior Research Software Engineer, Northern Arizona UniversityPotvrđena adresa e-pošte na nau.edu
Matthew Ryan DillonSenior Software EngineerPotvrđena adresa e-pošte na akdillon.net
Jai Ram RideoutOne CodexPotvrđena adresa e-pošte na onecodex.com
B KaehlerSchool of Science, University of New South WalesPotvrđena adresa e-pošte na adfa.edu.au
Gavin HuttleyProfessor of Computational Genomics, Australian National UniversityPotvrđena adresa e-pošte na anu.edu.au
Martin BlaserProfessor of Medicine and Microbiology, Rutgers UniversityPotvrđena adresa e-pošte na cabm.rutgers.edu
Huilin LiProfessor, NYU Langone HealthPotvrđena adresa e-pošte na nyulangone.org
Thomas W. BattagliaThe Netherlands Cancer Institute (NKI)Potvrđena adresa e-pošte na nyu.edu
Se Jin SongUniversity of California San DiegoPotvrđena adresa e-pošte na ucsd.edu
Karen KalanetraUniversity of CaliforniaPotvrđena adresa e-pošte na ucdavis.edu
Maria Gloria Dominguez-BelloProfessor, Director, NJ Institute for Food, Nutrition and Health, Rutgers UniversityPotvrđena adresa e-pošte na rutgers.edu
Sathish SubramanianPotvrđena adresa e-pošte na wusm.wustl.edu
Jeremiah FaithIcahn School of Medicine at Mount SinaiPotvrđena adresa e-pošte na mssm.edu
Dirk GeversJanssen Human Microbiome InstitutePotvrđena adresa e-pošte na its.jnj.com
Daniel McDonaldAmerican Gut, Knight Lab, Department of Pediatrics, UCSDPotvrđena adresa e-pošte na ucsd.edu
Laura CoxHarvard Medical SchoolPotvrđena adresa e-pošte na bwh.harvard.edu
Antonio GonzálezProgrammer Analyst, UC San DiegoPotvrđena adresa e-pošte na ucsd.edu

Prati

Nicholas Bokulich

ETH Zürich

Potvrđena adresa e-pošte na ethz.ch - Početna stranica

Food Microbiome Metagenomics Bioinformatics Biodiversity


Naslov Poredaj po navodima Poredaj po godini Poredaj po naslovu	Citirano Citirano	Godina
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019	10229	2019
Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing NA Bokulich, S Subramanian, JJ Faith, D Gevers, JI Gordon, R Knight, ... Nature methods 10 (1), 57-59, 2013	3267	2013
Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin NA Bokulich, BD Kaehler, JR Rideout, M Dillon, E Bolyen, R Knight, ... Microbiome 6 (1), 1-17, 2018	2670	2018
A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 457-463, 2017	1825	2017
Antibiotics, birth mode, and diet shape microbiome maturation during early life NA Bokulich, J Chung, T Battaglia, N Henderson, M Jay, H Li, A D. Lieber, ... Science translational medicine 8 (343), 343ra82-343ra82, 2016	1148	2016
Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer MG Dominguez-Bello, KM De Jesus-Laboy, N Shen, LM Cox, A Amir, ... Nature medicine 22 (3), 250-253, 2016	937	2016
Microbial biogeography of wine grapes is conditioned by cultivar, vintage, and climate NA Bokulich, JH Thorngate, PM Richardson, DA Mills Proceedings of the National Academy of Sciences 111 (1), E139-E148, 2014	838	2014
The soil microbiome influences grapevine-associated microbiota I Zarraonaindia, SM Owens, P Weisenhorn, K West, J Hampton-Marcell, ... MBio 6 (2), e02527-14, 2015	656	2015
Improved selection of internal transcribed spacer-specific primers enables quantitative, ultra-high-throughput profiling of fungal communities NA Bokulich, DA Mills Applied and environmental microbiology 79 (8), 2519-2526, 2013	425	2013
The microbiology of malting and brewing NA Bokulich, CW Bamforth Microbiology and Molecular Biology Reviews 77 (2), 157-172, 2013	389	2013
Metabolic and metagenomic outcomes from early-life pulsed antibiotic treatment YR Nobel, LM Cox, FF Kirigin, NA Bokulich, S Yamanishi, I Teitler, ... Nature communications 6 (1), 7486, 2015	343	2015
Associations among wine grape microbiome, metabolome, and fermentation behavior suggest microbial contribution to regional wine characteristics NA Bokulich, TS Collins, C Masarweh, G Allen, H Heymann, SE Ebeler, ... MBio 7 (3), e00631-16, 2016	299	2016
Next-generation sequencing reveals significant bacterial diversity of botrytized wine NA Bokulich, CML Joseph, G Allen, AK Benson, DA Mills PloS one 7 (5), e36357, 2012	261	2012
Facility-specific “house” microbiome drives microbial landscapes of artisan cheesemaking plants NA Bokulich, DA Mills Applied and environmental microbiology 79 (17), 5214-5223, 2013	260	2013
Brewhouse-resident microbiota are responsible for multi-stage fermentation of American coolship ale NA Bokulich, CW Bamforth, DA Mills PloS one 7 (4), e35507, 2012	211	2012
Human milk glycomics and gut microbial genomics in infant feces show a correlation between human milk oligosaccharides and gut microbiota: a proof-of-concept study MLA De Leoz, KM Kalanetra, NA Bokulich, JS Strum, MA Underwood, ... Journal of proteome research 14 (1), 491-502, 2015	194	2015
Learning representations of microbe–metabolite interactions JT Morton, AA Aksenov, LF Nothias, JR Foulds, RA Quinn, MH Badri, ... Nature methods 16 (12), 1306-1314, 2019	188	2019
RESCRIPt: Reproducible sequence taxonomy reference database management MS Robeson, DR O’Rourke, BD Kaehler, M Ziemski, MR Dillon, JT Foster, ... PLoS computational biology 17 (11), e1009581, 2021	186	2021
Monitoring seasonal changes in winery-resident microbiota NA Bokulich, M Ohta, PM Richardson, DA Mills PloS one 8 (6), e66437, 2013	182	2013
QIIME 2 enables comprehensive end‐to‐end analysis of diverse microbiome data and comparative studies with publicly available data M Estaki, L Jiang, NA Bokulich, D McDonald, A González, T Kosciolek, ... Current protocols in bioinformatics 70 (1), e100, 2020	162	2020

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