Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions C Chu, K Qu, FL Zhong, SE Artandi, HY Chang Molecular cell 44 (4), 667-678, 2011 | 1377 | 2011 |
Systematic discovery of Xist RNA binding proteins C Chu, QC Zhang, ST Da Rocha, RA Flynn, M Bharadwaj, JM Calabrese, ... Cell 161 (2), 404-416, 2015 | 1127 | 2015 |
Control of somatic tissue differentiation by the long non-coding RNA TINCR M Kretz, Z Siprashvili, C Chu, DE Webster, A Zehnder, K Qu, CS Lee, ... Nature 493 (7431), 231-235, 2013 | 1045 | 2013 |
Chromatin isolation by RNA purification (ChIRP) C Chu, J Quinn, HY Chang Journal of visualized experiments: JoVE, 3912, 2012 | 450 | 2012 |
Revealing long noncoding RNA architecture and functions using domain-specific chromatin isolation by RNA purification JJ Quinn, IA Ilik, K Qu, P Georgiev, C Chu, A Akhtar, HY Chang Nature biotechnology 32 (9), 933-940, 2014 | 204 | 2014 |
Technologies to probe functions and mechanisms of long noncoding RNAs C Chu, RC Spitale, HY Chang Nature structural & molecular biology 22 (1), 29-35, 2015 | 160 | 2015 |
7SK-BAF axis controls pervasive transcription at enhancers RA Flynn, BT Do, AJ Rubin, E Calo, B Lee, H Kuchelmeister, M Rale, ... Nature structural & molecular biology 23 (3), 231-238, 2016 | 119 | 2016 |
The transcription factor Zfp281 controls embryonic stem cell pluripotency by direct activation and repression of target genes ZX Wang, CHL Teh, CMY Chan, C Chu, M Rossbach, G Kunarso, ... Stem Cells 26 (11), 2791-2799, 2008 | 80 | 2008 |
Understanding RNA-Chromatin Interactions Using Chromatin Isolation by RNA Purification (ChIRP) C Chu, HY Chang Polycomb Group Proteins: Methods and Protocols, 115-123, 2016 | 63 | 2016 |
ChIRP-MS: RNA-directed proteomic discovery C Chu, HY Chang X-Chromosome Inactivation: Methods and Protocols, 37-45, 2018 | 62 | 2018 |
A pooled cell painting CRISPR screening platform enables de novo inference of gene function by self-supervised deep learning S Sivanandan, B Leitmann, E Lubeck, MM Sultan, P Stanitsas, N Ranu, ... bioRxiv, 2023.08. 13.553051, 2023 | 19 | 2023 |
PIRCh-seq: functional classification of non-coding RNAs associated with distinct histone modifications J Fang, Q Ma, C Chu, B Huang, L Li, P Cai, PJ Batista, KEM Tolentino, ... Genome biology 20, 1-21, 2019 | 19 | 2019 |
Dissection of multiple sclerosis genetics identifies B and CD4+ T cells as driver cell subsets MH Guo, P Sama, BA LaBarre, H Lokhande, J Balibalos, C Chu, X Du, ... Genome Biology 23 (1), 127, 2022 | 14 | 2022 |
RNA interactome analysis HYH Chang, C Chu US Patent 8,748,354, 2014 | 7 | 2014 |
Functional classification of noncoding RNAs associated with distinct histone modifications by PIRCh-seq J Fang, Q Ma, C Chu, B Huang, L Li, P Cai, PJ Batista, KEM Tolentino, ... bioRxiv, 667881, 2019 | 3 | 2019 |
Machine learning enabled pooled optical screening in human lung cancer cells S Sivanandan, M Salick, B Leitmann, KM Liu, M Sultan, N Ranu, CV Hao, ... NeurIPS 2022 Workshop on Learning Meaningful Representations of Life, 0 | 1 | |
Pooled optical screening and transcriptional measurements of cells comprising barcoded genetic perturbations MR Salick, S Sivanandan, C Hao, E Lubeck, A Kaykas, C Chu US Patent App. 18/113,481, 2024 | | 2024 |
In situ sequencing of rna transcripts with non-uniform 5 prime ends C Hao, MR Salick, C Chu US Patent App. 18/210,970, 2023 | | 2023 |
ChIRP: RNA Interactome Analysis C Chu Stanford University, 2014 | | 2014 |