| Method and apparatus for performing similarity searching on a data stream with respect to a query string JD Buhler, RD Chamberlain, MA Franklin, K Gyang, AC Jacob, ... US Patent 7,917,299, 2011 | 241 | 2011 |
| Active memory cube: A processing-in-memory architecture for exascale systems R Nair, SF Antao, C Bertolli, P Bose, JR Brunheroto, T Chen, CY Cher, ... IBM Journal of Research and Development 59 (2/3), 17: 1-17: 14, 2015 | 233 | 2015 |
| Method and Apparatus for Protein Sequence Alignment using FPGA Devices R Chamberlain, J Buhler, A Jacob, J Lancaster, B Harris US Patent App. 11/836,947, 2008 | 139 | 2008 |
| Biosequence Similarity Search on the Mercury System P Krishnamurthy, J Buhler, R Chamberlain, M Franklin, K Gyang, A Jacob, ... The Journal of VLSI Signal Processing Systems for Signal, Image, and Video …, 2007 | 115 | 2007 |
| Mercury BLASTP: Accelerating protein sequence alignment A Jacob, J Lancaster, J Buhler, B Harris, RD Chamberlain ACM Transactions on Reconfigurable Technology and Systems (TRETS) 1 (2), 1-44, 2008 | 109 | 2008 |
| Data access optimization in a processing-in-memory system Z Sura, A Jacob, T Chen, B Rosenburg, O Sallenave, C Bertolli, S Antao, ... Proceedings of the 12th ACM International Conference on Computing Frontiers, 1-8, 2015 | 89 | 2015 |
| Offloading support for OpenMP in Clang and LLVM SF Antao, A Bataev, AC Jacob, GT Bercea, AE Eichenberger, G Rokos, ... 2016 Third Workshop on the LLVM Compiler Infrastructure in HPC (LLVM-HPC), 1-11, 2016 | 88 | 2016 |
| Method and apparatus for performing similarity searching JD Buhler, RD Chamberlain, MA Franklin, K Gyang, AC Jacob, ... US Patent 8,515,682, 2013 | 88 | 2013 |
| Coordinating GPU threads for OpenMP 4.0 in LLVM C Bertolli, SF Antao, AE Eichenberger, KOBZ Sura, AC Jacob, T Chen, ... 2014 LLVM Compiler Infrastructure in HPC, 12-21, 2014 | 81 | 2014 |
| FPGA-accelerated seed generation in Mercury BLASTP A Jacob, J Lancaster, J Buhler, RD Chamberlain 15th Annual IEEE Symposium on Field-Programmable Custom Computing Machines …, 2007 | 80 | 2007 |
| Hardware technologies for high-performance data-intensive computing M Gokhale, J Cohen, A Yoo, WM Miller, A Jacob, C Ulmer, R Pearce Computer 41 (4), 60-68, 2008 | 79 | 2008 |
| Integrating GPU support for OpenMP offloading directives into Clang C Bertolli, SF Antao, GT Bercea, AC Jacob, AE Eichenberger, T Chen, ... Proceedings of the Second Workshop on the LLVM Compiler Infrastructure in …, 2015 | 72 | 2015 |
| Mercury BLASTN: Faster DNA sequence comparison using a streaming hardware architecture JD Buhler, JM Lancaster, AC Jacob, RD Chamberlain Proc. of Reconfigurable Systems Summer Institute, 2007 | 70 | 2007 |
| A banded Smith-Waterman FPGA accelerator for Mercury BLASTP B Harris, AC Jacob, JM Lancaster, J Buhler, RD Chamberlain 2007 International Conference on Field Programmable Logic and Applications …, 2007 | 68 | 2007 |
| Preliminary results in accelerating profile HMM search on FPGAs AC Jacob, JM Lancaster, JD Buhler, RD Chamberlain 2007 IEEE International Parallel and Distributed Processing Symposium, 1-8, 2007 | 50 | 2007 |
| Accelerating Nussinov RNA secondary structure prediction with systolic arrays on FPGAs A Jacob, J Buhler, RD Chamberlain 2008 International Conference on Application-Specific Systems, Architectures …, 2008 | 46 | 2008 |
| Method and apparatus for performing similarity searching JD Buhler, RD Chamberlain, MA Franklin, K Gyang, AC Jacob, ... US Patent 9,547,680, 2017 | 44 | 2017 |
| Performance analysis of OpenMP on a GPU using a CORAL proxy application GT Bercea, C Bertolli, SF Antao, AC Jacob, AE Eichenberger, T Chen, ... Proceedings of the 6th International Workshop on Performance Modeling …, 2015 | 37 | 2015 |
| Performance analysis and optimization of Clang's OpenMP 4.5 GPU support M Martineau, S McIntosh-Smith, C Bertolli, AC Jacob, SF Antao, ... 2016 7th International Workshop on Performance Modeling, Benchmarking and …, 2016 | 28 | 2016 |
| Early experiences porting three applications to OpenMP 4.5 I Karlin, T Scogland, AC Jacob, SF Antao, GT Bercea, C Bertolli, ... OpenMP: Memory, Devices, and Tasks: 12th International Workshop on OpenMP …, 2016 | 27 | 2016 |
