Jeffrey Comer
The adaptive biasing force method: Everything you always wanted to know but were afraid to ask
J Comer, JC Gumbart, J Hénin, T Lelièvre, A Pohorille, C Chipot
The Journal of Physical Chemistry B 119 (3), 1129-1151, 2015
Assessing graphene nanopores for sequencing DNA
DB Wells, M Belkin, J Comer, A Aksimentiev
Nano letters 12 (8), 4117-4123, 2012
Detection of DNA sequences using an alternating electric field in a nanopore capacitor
G Sigalov, J Comer, G Timp, A Aksimentiev
Nano letters 8 (1), 56-63, 2008
Simulation-based approaches for determining membrane permeability of small compounds
CT Lee, J Comer, C Herndon, N Leung, A Pavlova, RV Swift, C Tung, ...
Journal of chemical information and modeling 56 (4), 721-733, 2016
Nanopore sequencing: electrical measurements of the code of life
W Timp, UM Mirsaidov, D Wang, J Comer, A Aksimentiev, G Timp
IEEE transactions on nanotechnology 9 (3), 281-294, 2010
DNA base-calling from a nanopore using a Viterbi algorithm
W Timp, J Comer, A Aksimentiev
Biophysical journal 102 (10), L37-L39, 2012
Paclitaxel-PHBV nanoparticles and their toxicity to endometrial and primary ovarian cancer cells
C Vilos, FA Morales, PA Solar, NS Herrera, FD Gonzalez-Nilo, DA Aguayo, ...
Biomaterials 34 (16), 4098-4108, 2013
Predicting the DNA sequence dependence of nanopore ion current using atomic-resolution Brownian dynamics
J Comer, A Aksimentiev
The Journal of Physical Chemistry C 116 (5), 3376-3393, 2012
Microscopic mechanics of hairpin DNA translocation through synthetic nanopores
J Comer, V Dimitrov, Q Zhao, G Timp, A Aksimentiev
Biophysical Journal 96 (2), 593-608, 2009
Predicting adsorption affinities of small molecules on carbon nanotubes using molecular dynamics simulation
J Comer, R Chen, H Poblete, A Vergara-Jaque, JE Riviere
ACS nano 9 (12), 11761-11774, 2015
Dangerous liaisons between detergents and membrane proteins. The case of mitochondrial uncoupling protein 2
M Zoonens, J Comer, S Masscheleyn, E Pebay-Peyroula, C Chipot, ...
Journal of the American Chemical Society 135 (40), 15174-15182, 2013
Slowing the translocation of double-stranded DNA using a nanopore smaller than the double helix
U Mirsaidov, J Comer, V Dimitrov, A Aksimentiev, G Timp
Nanotechnology 21 (39), 395501, 2010
Computationally efficient methodology for atomic-level characterization of dendrimer–drug complexes: a comparison of amine-and acetyl-terminated PAMAM
A Vergara-Jaque, J Comer, L Monsalve, FD Gonzalez-Nilo, C Sandoval
The Journal of Physical Chemistry B 117 (22), 6801-6813, 2013
Lipid bilayer coated Al2O3 nanopore sensors: towards a hybrid biological solid-state nanopore
BM Venkatesan, J Polans, J Comer, S Sridhar, D Wendell, A Aksimentiev, ...
Biomedical microdevices 13, 671-682, 2011
New insights into peptide–silver nanoparticle interaction: deciphering the role of cysteine and lysine in the peptide sequence
H Poblete, A Agarwal, SS Thomas, C Bohne, R Ravichandran, J Phopase, ...
Langmuir 32 (1), 265-273, 2016
Molecular determinants of phosphatidylinositol 4, 5-bisphosphate (PI (4, 5) P2) binding to transient receptor potential V1 (TRPV1) channels
H Poblete, I Oyarzún, P Olivero, J Comer, M Zuñiga, RV Sepulveda, ...
Journal of Biological Chemistry 290 (4), 2086-2098, 2015
Multiple-replica strategies for free-energy calculations in NAMD: Multiple-walker adaptive biasing force and walker selection rules
J Comer, JC Phillips, K Schulten, C Chipot
Journal of chemical theory and computation 10 (12), 5276-5285, 2014
Close encounters with DNA
C Maffeo, J Yoo, J Comer, DB Wells, B Luan, A Aksimentiev
Journal of Physics: Condensed Matter 26 (41), 413101, 2014
Calculating position-dependent diffusivity in biased molecular dynamics simulations
J Comer, C Chipot, FD González-Nilo
Journal of chemical theory and computation 9 (2), 876-882, 2013
Stretching and unzipping nucleic acid hairpins using a synthetic nanopore
Q Zhao, J Comer, V Dimitrov, S Yemenicioglu, A Aksimentiev, G Timp
Nucleic Acids Research 36 (5), 1532-1541, 2008
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