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Marina Sirota
Marina Sirota
Professor, Acting Director, Bakar Computational Health Sciences Institute, UCSF
Verified email at ucsf.edu
Title
Cited by
Cited by
Year
Evolution of genes and genomes on the Drosophila phylogeny
AG Clark, MB Eisen, DR Smith, CM Bergman, B Oliver, TA Markow, ...
Nature 450 (7167), 203-18, 2007
22562007
Identifying a high fraction of the human genome to be under selective constraint using GERP++
EV Davydov, DL Goode, M Sirota, GM Cooper, A Sidow, S Batzoglou
PLoS computational biology 6 (12), e1001025, 2010
18882010
Ten years of pathway analysis: current approaches and outstanding challenges
P Khatri, M Sirota, AJ Butte
PLoS computational biology 8 (2), e1002375, 2012
17792012
Systematic pan-cancer analysis of tumour purity
D Aran, M Sirota, AJ Butte
Nature communications 6 (1), 8971, 2015
10602015
Discovery and preclinical validation of drug indications using compendia of public gene expression data
M Sirota, JT Dudley, J Kim, AP Chiang, AA Morgan, A Sweet-Cordero, ...
Science translational medicine 3 (96), 96ra77-96ra77, 2011
8882011
Computational repositioning of the anticonvulsant topiramate for inflammatory bowel disease
JT Dudley, M Sirota, M Shenoy, RK Pai, S Roedder, AP Chiang, ...
Science translational medicine 3 (96), 96ra76-96ra76, 2011
6542011
Comprehensive analysis of normal adjacent to tumor transcriptomes
D Aran, R Camarda, J Odegaard, H Paik, B Oskotsky, G Krings, A Goga, ...
Nature communications 8 (1), 1077, 2017
5142017
Immunoglobulin class-switched B cells form an active immune axis between CNS and periphery in multiple sclerosis
A Palanichamy, L Apeltsin, TC Kuo, M Sirota, S Wang, SJ Pitts, ...
Science translational medicine 6 (248), 248ra106-248ra106, 2014
2582014
B cell exchange across the blood-brain barrier in multiple sclerosis
H von Büdingen, TC Kuo, M Sirota, CJ van Belle, L Apeltsin, J Glanville, ...
The Journal of Clinical Investigation, 2012
2582012
Non-synonymous and synonymous coding SNPs show similar likelihood and effect size of human disease association
R Chen, EV Davydov, M Sirota, AJ Butte
PloS one 5 (10), e13574, 2010
2172010
Cross-tissue analysis of gene and protein expression in normal and cancer tissues
I Kosti, N Jain, D Aran, AJ Butte, M Sirota
Scientific reports 6 (1), 24799, 2016
2032016
Autoimmune disease classification by inverse association with SNP alleles
M Sirota, MA Schaub, S Batzoglou, WH Robinson, AJ Butte
PLoS genetics 5 (12), e1000792, 2009
1912009
Reversal of cancer gene expression correlates with drug efficacy and reveals therapeutic targets
B Chen, L Ma, H Paik, M Sirota, W Wei, MS Chua, S So, AJ Butte
Nature communications 8 (1), 16022, 2017
1882017
Expression-based genome-wide association study links the receptor CD44 in adipose tissue with type 2 diabetes
K Kodama, M Horikoshi, K Toda, S Yamada, K Hara, J Irie, M Sirota, ...
Proceedings of the National Academy of Sciences 109 (18), 7049-7054, 2012
1792012
Multiomics modeling of the immunome, transcriptome, microbiome, proteome and metabolome adaptations during human pregnancy
MS Ghaemi, DB DiGiulio, K Contrepois, B Callahan, TTM Ngo, ...
Bioinformatics 35 (1), 95-103, 2019
1632019
Comprehensive transcriptomic analysis of cell lines as models of primary tumors across 22 tumor types
K Yu, B Chen, D Aran, J Charalel, C Yau, DM Wolf, LJ Van ‘T Veer, ...
Nature communications 10 (1), 3574, 2019
1382019
Mortality risk among patients with COVID-19 prescribed selective serotonin reuptake inhibitor antidepressants
T Oskotsky, I Marić, A Tang, B Oskotsky, RJ Wong, N Aghaeepour, ...
JAMA network open 4 (11), e2133090-e2133090, 2021
1362021
CONTRAST: a discriminative, phylogeny-free approach to multiple informant de novogene prediction
SS Gross, CB Do, M Sirota, S Batzoglou
Genome biology 8, 1-16, 2007
1342007
dittoSeq: universal user-friendly single-cell and bulk RNA sequencing visualization toolkit
DG Bunis, J Andrews, GK Fragiadakis, TD Burt, M Sirota
Bioinformatics 36 (22-23), 5535-5536, 2020
1312020
Environmental influences on reproductive health: the importance of chemical exposures
A Wang, A Padula, M Sirota, TJ Woodruff
Fertility and sterility 106 (4), 905-929, 2016
1172016
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